Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid.

Autor: Gu W; Department of Laboratory Medicine, University of California, San Francisco, San Francisco.; Department of Pathology, Stanford University, Stanford, California., Rauschecker AM; Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco., Hsu E; Department of Laboratory Medicine, University of California, San Francisco, San Francisco., Zorn KC; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco., Sucu Y; Department of Laboratory Medicine, University of California, San Francisco, San Francisco., Federman S; Department of Laboratory Medicine, University of California, San Francisco, San Francisco., Gopez A; Department of Laboratory Medicine, University of California, San Francisco, San Francisco., Arevalo S; Department of Laboratory Medicine, University of California, San Francisco, San Francisco., Sample HA; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco., Talevich E; DNANexus, Mountain View, California., Nguyen ED; Department of Laboratory Medicine, University of California, San Francisco, San Francisco., Gottschall M; Department of Laboratory Medicine, University of California, San Francisco, San Francisco., Nourbakhsh B; Department of Neurology, Johns Hopkins University, Baltimore, Maryland., Gold CA; Department of Neurology, Stanford University, Stanford, California., Cree BAC; Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco., Douglas VC; Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco., Richie MB; Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco., Shah MP; Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco., Josephson SA; Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco.; Editor in Chief, JAMA Neurology., Gelfand JM; Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco., Miller S; Department of Laboratory Medicine, University of California, San Francisco, San Francisco., Wang L; Department of Laboratory Medicine, University of California, San Francisco, San Francisco., Tihan T; Department of Pathology, University of California, San Francisco, San Francisco., DeRisi JL; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco.; Chan Zuckerberg Biohub, San Francisco, California., Chiu CY; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, California.; Department of Medicine, Division of Infectious Diseases, University of California, San Francisco, San Francisco., Wilson MR; Department of Neurology, Weill Institute for Neurosciences, University of California, San Francisco, San Francisco.

Publikováno v: JAMA neurology [JAMA Neurol] 2021 Nov 01; Vol. 78 (11), pp. 1355-1366.

Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids.

Autor: Gu W; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA. weigu@stanford.edu.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA. weigu@stanford.edu.; Department of Pathology, Stanford University, Stanford, CA, 94305, USA. weigu@stanford.edu.; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA. weigu@stanford.edu., Talevich E; DNANexus, Mountain View, CA, 94040, USA., Hsu E; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Qi Z; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Urisman A; Department of Pathology, University of California San Francisco, San Francisco, CA, 94107, USA., Federman S; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA., Gopez A; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA., Arevalo S; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA., Gottschall M; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Liao L; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Tung J; Department of Pathology, Stanford University, Stanford, CA, 94305, USA., Chen L; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Lim H; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Ho C; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Kasowski M; Department of Pathology, Stanford University, Stanford, CA, 94305, USA., Oak J; Department of Pathology, Stanford University, Stanford, CA, 94305, USA.; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Holmes BJ; Department of Pathology, Stanford University, Stanford, CA, 94305, USA.; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Yeh I; Department of Pathology, University of California San Francisco, San Francisco, CA, 94107, USA., Yu J; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Wang L; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Miller S; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA., DeRisi JL; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, 94107, USA.; Chan Zuckerberg Biohub, San Francisco, CA, 94107, USA., Prakash S; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Simko J; Department of Pathology, University of California San Francisco, San Francisco, CA, 94107, USA., Chiu CY; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA. charles.chiu@ucsf.edu.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA. charles.chiu@ucsf.edu.; Department of Medicine, Division of Infectious Diseases, University of California San Francisco, San Francisco, CA, 94107, USA. charles.chiu@ucsf.edu.

Publikováno v: Genome medicine [Genome Med] 2021 Jun 01; Vol. 13 (1), pp. 98. Date of Electronic Publication: 2021 Jun 01.

Comprehensive evaluation and guidance of structural variation detection tools in chicken whole genome sequence data.

Autor: Ma, Cheng^1,2 (AUTHOR), Shi, Xian^1,3 (AUTHOR), Li, Xuzhen^4,5 (AUTHOR), Zhang, Ya-Ping^1,3,6,7 (AUTHOR) zhangyp@mail.kiz.ac.cn, Peng, Min-Sheng^1,3,7 (AUTHOR) pengminsheng@mail.kiz.ac.cn

Publikováno v: BMC Genomics. 10/16/2024, Vol. 25 Issue 1, p1-12. 12p.

Proof of Concept for Genome Profiling of the Neurofibroma/Sarcoma Sequence in Neurofibromatosis Type 1.

Autor: Cannizzaro, Ilenia Rita¹ (AUTHOR), Treccani, Mirko^1,2 (AUTHOR), Taiani, Antonietta¹ (AUTHOR), Ambrosini, Enrico³ (AUTHOR), Busciglio, Sabrina¹ (AUTHOR), Cesarini, Sofia¹ (AUTHOR), Luberto, Anita¹ (AUTHOR), De Sensi, Erika¹ (AUTHOR), Moschella, Barbara¹ (AUTHOR), Gismondi, Pierpacifico⁴ (AUTHOR), Azzoni, Cinzia⁵ (AUTHOR), Bottarelli, Lorena⁵ (AUTHOR), Giordano, Giovanna⁵ (AUTHOR), Corradi, Domenico⁵ (AUTHOR), Silini, Enrico Maria⁵ (AUTHOR), Zanatta, Valentina⁶ (AUTHOR), Cennamo, Federica⁷ (AUTHOR), Bertolini, Patrizia⁷ (AUTHOR), Caggiati, Patrizia³ (AUTHOR), Martorana, Davide³ (AUTHOR)

Publikováno v: International Journal of Molecular Sciences. Oct2024, Vol. 25 Issue 19, p10822. 18p.

Mutational spectrum of breast cancer by shallow whole-genome sequencing of cfDNA and tumor gene panel analysis.

Autor: Ambriz-Barrera, Fernando^1,2 (AUTHOR), Rojas-Jiménez, Ernesto^1,2 (AUTHOR), Díaz-Velásquez, Clara Estela^1,2 (AUTHOR), De-La-Cruz-Montoya, Aldo Hugo^1,2 (AUTHOR), Martínez-Gregorio, Héctor^1,2 (AUTHOR), Ruiz-De-La-Cruz, Miguel^1,2 (AUTHOR), Huertas, Antonio³ (AUTHOR), Montealegre, Ana Lorena⁴ (AUTHOR), Castro-Rojas, Carlos⁴ (AUTHOR), Acosta, Gabriela⁴ (AUTHOR), Vaca-Paniagua, Felipe^1,2 (AUTHOR) felipe.vaca@iztacala.unam.mx, Perdomo, Sandra⁵ (AUTHOR) perdomos@iarc.who.int

Publikováno v: PLoS ONE. 9/12/2024, Vol. 19 Issue 9, p1-18. 18p.