Zobrazeno 1 - 10
of 178
pro vyhledávání: '"Takehiko Itoh"'
Autor:
Mariel Galotta, Anh Tuan Dam, Yuhei Eto, Atsushi Toyoda, Takehiko Itoh, Sipra Mohapatra, Yukiko Ogino, Marie Saitou, Michiya Matsuyama, Tapas Chakraborty, Kohei Ohta
Publikováno v:
Frontiers in Marine Science, Vol 11 (2024)
Sexual development and reproduction are largely linked to epigenetic changes in many fish species. However, understanding of epigenetic regulation in scombrid species, such as tunas and mackerels, is limited. This study investigates DNA methylation
Externí odkaz:
https://doaj.org/article/a9eb460e7bf94d95af12c87378b70ba8
Autor:
Miki Okuno, Yuta Mochimaru, Kentaro Matsuoka, Takahiro Yamabe, Luisa Matiz-Ceron, Takamichi Jogahara, Atsushi Toyoda, Asato Kuroiwa, Takehiko Itoh
Publikováno v:
Scientific Data, Vol 10, Iss 1, Pp 1-10 (2023)
Abstract Herein, we present the first high-quality long-read-based chromosome-level genome assemblies and gene annotations of the genomes of three endangered Tokudaia species: Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki. Thes
Externí odkaz:
https://doaj.org/article/545bd1014de748eeba5d9d974f1e6621
Autor:
Issei Yahiro, Kyle Dominic Eguid Barnuevo, Oga Sato, Sipra Mohapatra, Atsushi Toyoda, Takehiko Itoh, Kaoru Ohno, Michiya Matsuyama, Tapas Chakraborty, Kohei Ohta
Publikováno v:
Frontiers in Physiology, Vol 15 (2024)
SDF-1/CXCR4 chemokine signaling are indispensable for cell migration, especially the Primordial Germ Cell (PGC) migration towards the gonadal ridge during early development. We earlier found that this signaling is largely conserved in the Japanese an
Externí odkaz:
https://doaj.org/article/b03fc2875efe4557b28bf1815a0bb3e3
Autor:
Hiroyuki Tanaka, Tatsuki Hori, Shohei Yamamoto, Atsushi Toyoda, Kentaro Yano, Kyoko Yamane, Takehiko Itoh
Publikováno v:
Scientific Data, Vol 10, Iss 1, Pp 1-12 (2023)
Abstract In Japan, wasabi (Eutrema japonicum) is an important traditional condiment, and is recognized as an endemic species. In the present study, we generated a chromosome-level and haplotype-resolved reference genome for E. japonicum using PacBio
Externí odkaz:
https://doaj.org/article/95bed19f918f4bd1abc488ef56c9c165
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-27 (2023)
Abstract Chromosome-level haplotype-resolved genome assembly is an important resource in molecular biology. However, current de novo haplotype assemblers require parental data or reference genomes and often fail to provide chromosome-level results. W
Externí odkaz:
https://doaj.org/article/013b98066a4b4a14b1f1539ad7734879
Autor:
Kohei Nagao, Yoshiki Tanaka, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh, Souichirou Kubota, Yuji Goto
Publikováno v:
PLoS ONE, Vol 18, Iss 8, p e0286941 (2023)
In the Japanese hagfish, Eptatretus burgeri, approximately 21% of the genomic DNA in germ cells (2n = 52) consists of 16 chromosomes (eliminated [E]-chromosomes) that are eliminated from presumptive somatic cells (2n = 36). To uncover the eliminated
Externí odkaz:
https://doaj.org/article/2f111a10ccd9491fbc70f7056c3b1c85
Autor:
Michiharu Nakano, Hideki Hirakawa, Eigo Fukai, Atsushi Toyoda, Rei Kajitani, Yohei Minakuchi, Takehiko Itoh, Yohei Higuchi, Toshiaki Kozuka, Hidemasa Bono, Kenta Shirasawa, Ippei Shiraiwa, Katsuhiko Sumitomo, Tamotsu Hisamatsu, Michio Shibata, Sachiko Isobe, Kenji Taniguchi, Makoto Kusaba
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-11 (2021)
Nakano et al. sequenced the genome of a model species for hexaploid cultivated chrysanthemum, an important cut flower. While they investigated evolution, duplication events, and a novel retrotransposon in this study, they also demonstrated the transl
Externí odkaz:
https://doaj.org/article/a9a05f0d9b494f7684eb96b36859c678
Autor:
Guillem Ylla, Taro Nakamura, Takehiko Itoh, Rei Kajitani, Atsushi Toyoda, Sayuri Tomonari, Tetsuya Bando, Yoshiyasu Ishimaru, Takahito Watanabe, Masao Fuketa, Yuji Matsuoka, Austen A. Barnett, Sumihare Noji, Taro Mito, Cassandra G. Extavour
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-12 (2021)
Ylla, Extavour et al. use genomic data from crickets to investigate the evolution of large genome sizes and DNA methylation events in insects. Their findings indicate that transposable element activity drove genome expansion in hemimetabolous insects
Externí odkaz:
https://doaj.org/article/0568cec9b7a546a2b49bef827aec2aed
Autor:
Koji Inoue, Yuki Yoshioka, Hiroyuki Tanaka, Azusa Kinjo, Mieko Sassa, Ikuo Ueda, Chuya Shinzato, Atsushi Toyoda, Takehiko Itoh
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Abstract Mussels, which occupy important positions in marine ecosystems, attach tightly to underwater substrates using a proteinaceous holdfast known as the byssus, which is tough, durable, and resistant to enzymatic degradation. Although various bys
Externí odkaz:
https://doaj.org/article/6fed99ff34d442bd8e5ab64743dd2e78
Autor:
Naohisa Wada, Hideaki Yuasa, Rei Kajitani, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Atsushi Toyoda, Sen-Lin Tang, Yukihiro Higashimura, Hugh Sweatman, Zac Forsman, Omri Bronstein, Gal Eyal, Nalinee Thongtham, Takehiko Itoh, Tetsuya Hayashi, Nina Yasuda
Publikováno v:
Microbiome, Vol 8, Iss 1, Pp 1-14 (2020)
Abstract Background Population outbreaks of the crown-of-thorns starfish (Acanthaster planci sensu lato; COTS), a primary predator of reef-building corals in the Indo-Pacific Ocean, are a major threat to coral reefs. While biological and ecological k
Externí odkaz:
https://doaj.org/article/db5002c930234a26b3323758428be8f4