Inference of Regulatory System for TAG Biosynthesis in Lipomyces starkeyi

Autor: Sachiyo Aburatani, Koji Ishiya, Toshikazu Itoh, Toshihiro Hayashi, Takeaki Taniguchi, Hiroaki Takaku

Publikováno v: Bioengineering, Vol 7, Iss 4, p 148 (2020)

Improving the bioproduction ability of efficient host microorganisms is a central aim in bioengineering. To control biosynthesis in living cells, the regulatory system of the whole biosynthetic pathway should be clearly understood. In this study, we

Externí odkaz: https://doaj.org/article/7b1cb559c2424f5a968d6a4147405935

Tracking difference in gene expression in a time-course experiment using gene set enrichment analysis.

Autor: Pui Shan Wong, Michihiro Tanaka, Yoshihiko Sunaga, Masayoshi Tanaka, Takeaki Taniguchi, Tomoko Yoshino, Tsuyoshi Tanaka, Wataru Fujibuchi, Sachiyo Aburatani

Publikováno v: PLoS ONE, Vol 9, Iss 9, p e107629 (2014)

Fistulifera sp. strain JPCC DA0580 is a newly sequenced pennate diatom that is capable of simultaneously growing and accumulating lipids. This is a unique trait, not found in other related microalgae so far. It is able to accumulate between 40 to 60%

Externí odkaz: https://doaj.org/article/aee62d2f5078484694cb797a5402d18a

An automated system for evaluation of the potential functionome: MAPLE version 2.1.0

Autor: Wataru Arai, Susumu Goto, Takeaki Taniguchi, Kazuhiro Takemoto, Hideto Takami, Yuki Moriya

Publikováno v: DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes

Metabolic and physiological potential evaluator (MAPLE) is an automatic system that can perform a series of steps used in the evaluation of potential comprehensive functions (functionome) harboured in the genome and metagenome. MAPLE first assigns KE

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8bd3ad622abae9637140d5d1e65dd06d
http://europepmc.org/articles/PMC5066172

MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes

Autor: Takeaki Taniguchi, Kazuhiro Takemoto, Yuki Moriya, Wataru Arai, Hiroyuki Ogata, Hideto Takami, Hideya Uehara, Susumu Goto

Publikováno v: Bioscience, biotechnology, and biochemistry. 82(9)

MAPLE is an automated system for inferring the potential comprehensive functions harbored by genomes and metagenomes. To reduce runtime in MAPLE analyzing the massive amino acid datasets of over 1 million sequences, we improved it by adapting the KEG

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8726cef36b014c4149420b9ffb165893
https://pubmed.ncbi.nlm.nih.gov/29792119

Oil accumulation by the oleaginous diatom Fistulifera solaris as revealed by the genome and transcriptome

Autor: Michihiro Tanaka, Takeaki Taniguchi, Chris Bowler, Michiko Nemoto, Yorikane Fukuda, Wataru Fujibuchi, Pui Shan Wong, Alaguraj Veluchamy, Mitsufumi Matsumoto, Heni Abida, Eric Maréchal, Yoshihiko Sunaga, Tomoko Yoshino, Sachiyo Aburatani, Tsuyoshi Tanaka, Masaki Muto, Masayoshi Tanaka, Yoshiaki Maeda

Publikováno v: The Plant cell
The Plant cell, American Society of Plant Biologists (ASPB), 2015, 27 (1), pp.162-76
The Plant cell, 2015, 27 (1), pp.162-76. ⟨10.1105/tpc.114.135194⟩
The Plant cell, American Society of Plant Biologists (ASPB), 2015, 27 (1), pp.162-76. ⟨10.1105/tpc.114.135194⟩

Supplemental Data; International audience; Oleaginous photosynthetic organisms such as microalgae are promising sources for biofuel production through the generation of carbon-neutral sustainable energy. However, the metabolic mechanisms driving high

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::193f729e7c40a7017e9d5e6bce55a07d
https://hal.archives-ouvertes.fr/hal-01142141