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pro vyhledávání: '"Takaki, Ryota"'
The spatial organization of DNA involves DNA loop extrusion and the formation of protein-DNA condensates. While the significance of each process is increasingly recognized, their interplay remains unexplored. Using molecular dynamics simulation and t
Externí odkaz:
http://arxiv.org/abs/2407.03109
Autor:
Takaki, Ryota, Thirumalai, Dave
Protein aggregates exhibit diverse morphology, exemplified by amyloid fibrils, gel-like structures, and liquid-like condensates. Differences in the morphologies in identical proteins play important functional roles in several diseases. Simulations us
Externí odkaz:
http://arxiv.org/abs/2406.08362
Biological condensates are assemblies of proteins and nucleic acids that form membraneless compartments in cells and play essential roles in cellular functions. In many cases they exhibit the physical properties of liquid droplets that coexist in a s
Externí odkaz:
http://arxiv.org/abs/2303.18028
Molecular motors belonging to the kinesin and myosin super family hydrolyze ATP by cycling through a sequence of chemical states. These cytoplasmic motors are dimers made up of two linked identical monomeric globular proteins. Fueled by the free ener
Externí odkaz:
http://arxiv.org/abs/2112.15088
Condensation of hundreds of mega-base-pair-long human chromosomes in a small nuclear volume is a spectacular phenomenon. This process is driven by the formation of chromosome loops. ATP consuming motor, condensin, interacts with chromatin segments to
Externí odkaz:
http://arxiv.org/abs/2006.00129
Dimeric molecular motors walk on polar tracks by binding and hydrolyzing one ATP per step. Despite tremendous progress, the waiting state for ATP binding in the well-studied kinesin that walks on microtubule (MT), remains controversial. One experimen
Externí odkaz:
http://arxiv.org/abs/1908.07570
Publikováno v:
In Cell Reports 25 April 2023 42(4)
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Akademický článek
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Autor:
Takaki R; Max Planck Institute for the Physics of Complex Systems, Dresden 01187, Germany., Thirumalai D; Department of Chemistry, The University of Texas at Austin, Austin, TX 78712.; Department of Physics, The University of Texas at Austin, Austin, TX 78712.
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2024 Dec 10; Vol. 121 (50), pp. e2409973121. Date of Electronic Publication: 2024 Dec 06.