Zobrazeno 1 - 10
of 112
pro vyhledávání: '"Takahisa Yamato"'
Autor:
Takahisa Yamato, Olivier Laprévote
Publikováno v:
Biophysics and Physicobiology, Vol 16 (2019)
Normal mode analysis provides a powerful tool in biophysical computations. Particularly, we shed light on its application to protein properties because they directly lead to biological functions. As a result of normal mode analysis, the protein motio
Externí odkaz:
https://doaj.org/article/79d68dd915c840609ee3a7f9cc6c9bce
Publikováno v:
The journal of physical chemistry. B. 126(16)
Protein molecules are thermally fluctuating and tightly packed amino acid residues strongly interact with each other. Such interactions are characterized in terms of heat current at the atomic level. We calculated the thermal conductivity of a small
Publikováno v:
The Journal of Physical Chemistry B. 124:9852-9861
Molecular dynamics simulations of the villin headpiece subdomain HP36 have been carried out to examine relations between rates of vibrational energy transfer across non-covalently bonded contacts and equilibrium structural fluctuations, with focus on
Publikováno v:
The Journal of Physical Chemistry B. 124:1148-1159
Molecular dynamics simulations of the homodimeric hemoglobin from Scapharca inaequivalvis (HbI) have been carried out to examine relations between rates of vibrational energy transfer across nonbon...
Autor:
Takahisa Yamato
Publikováno v:
Seibutsu Butsuri. 60:094-097
Recent developments in the computational study of protein structural and vibrational energy dynamics
Autor:
David M. Leitner, Takahisa Yamato
Publikováno v:
Biophys Rev
Recent developments in the computational study of energy transport in proteins are reviewed, including advances in both methodology and applications. The concept of energy exchange network (EEN) is discussed, and a recent calculation of EENs for the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1385ba810ab89b8c0297e39ce0bc22c5
https://europepmc.org/articles/PMC7242592/
https://europepmc.org/articles/PMC7242592/
Publikováno v:
The Journal of Physical Chemistry B. 122:9331-9339
Theoretical arguments and results of molecular dynamics (MD) simulations of myoglobin at 300 K are presented to relate rates of vibrational energy transfer across nonbonded contacts interacting via short-range potentials to dynamics of the contact. B
Autor:
Takahisa Yamato, David M. Leitner
Publikováno v:
Biophys Rev
Publikováno v:
The Journal of Physical Chemistry B. 122:6912-6921
The photoinduced electron transfer (ET) reaction of cyclobutane pyrimidine dimer (CPD) photolyase plays an essential role in its DNA repair reaction, and the molecular mechanism of the ET reaction has attracted a large number of experimental and theo
Publikováno v:
Chemical Physics Letters. 691:276-282
Single-molecule force spectroscopy by atomic force microscopy allows us to get insight into the mechanical unfolding of membrane proteins, and a typical experiment exhibits characteristic patterns on the force distance curves. The origin of these pat