Zobrazeno 1 - 7
of 7
pro vyhledávání: '"Tahani Al Bulushi"'
Autor:
Anand V Sastry, Yuan Yuan, Saugat Poudel, Kevin Rychel, Reo Yoo, Cameron R Lamoureux, Gaoyuan Li, Joshua T Burrows, Siddharth Chauhan, Zachary B Haiman, Tahani Al Bulushi, Yara Seif, Bernhard O Palsson, Daniel C Zielinski
Publikováno v:
PLoS Computational Biology, Vol 20, Iss 10, p e1012546 (2024)
Public gene expression databases are a rapidly expanding resource of organism responses to diverse perturbations, presenting both an opportunity and a challenge for bioinformatics workflows to extract actionable knowledge of transcription regulatory
Externí odkaz:
https://doaj.org/article/012b0c0d41224b3b907edb195e4abdcc
Autor:
Siddharth M. Chauhan, Saugat Poudel, Kevin Rychel, Cameron Lamoureux, Reo Yoo, Tahani Al Bulushi, Yuan Yuan, Bernhard O. Palsson, Anand V. Sastry
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Dynamic cellular responses to environmental constraints are coordinated by the transcriptional regulatory network (TRN), which modulates gene expression. This network controls most fundamental cellular responses, including metabolism, motility, and s
Externí odkaz:
https://doaj.org/article/b4582c4208f245b3a0ff91eaa3934556
Autor:
Yuan Yuan, Yara Seif, Kevin Rychel, Reo Yoo, Siddharth Chauhan, Saugat Poudel, Tahani Al-bulushi, Bernhard O. Palsson, Anand V. Sastry
Publikováno v:
Yuan, Y, Seif, Y, Rychel, K, Yoo, R, Chauhan, S, Poudel, S, Al-bulushi, T, Palsson, B O & Sastry, A 2022, ' Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures ', mSystems, vol. 7, no. 6, e0046722 . https://doi.org/10.1128/msystems.00467-22
mSystems, vol 7, iss 6
mSystems, vol 7, iss 6
Establishing transcriptional regulatory networks (TRNs) in bacteria has been limited to well-characterized model strains. Using machine learning methods, we established the transcriptional regulatory networks of six Salmonella enterica serovar Typhim
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fc14077c1756b77bafe4c618a3e177b7
https://doi.org/10.1128/msystems.00467-22
https://doi.org/10.1128/msystems.00467-22
Autor:
Yuan Yuan, Yara Seif, Kevin Rychel, Reo Yoo, Siddharth Chauhan, Saugat Poudel, Tahani Al-bulushi, Bernhard O. Palsson, Anand Sastry
Salmonella enterica Typhimurium is a serious pathogen that is involved in human nontyphoidal infections. Tackling Typhimurium infections is difficult due to the species’ dynamic adaptation to its environment, which is dictated by a complex transcri
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3e7331586d53414a05337e84404c629e
https://doi.org/10.1101/2022.01.11.475931
https://doi.org/10.1101/2022.01.11.475931
Autor:
Ye Gao, Bernhard O. Palsson, Donghyuk Kim, Katherine Decker, Tahani Al Bulushi, Byung-Kwan Cho, Siddharth Chauhan, Kevin Rychel
Publikováno v:
Nucleic acids research, vol 50, iss D1
Nucleic Acids Research
Decker, K T, Gao, Y, Rychel, K, Al Bulushi, T, Chauhan, S M, Kim, D, Cho, B-K & Palsson, B O 2022, ' proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms ', Nucleic Acids Research, vol. 50, no. D1, pp. D1077-D1084 . https://doi.org/10.1093/nar/gkab1043
Nucleic Acids Research
Decker, K T, Gao, Y, Rychel, K, Al Bulushi, T, Chauhan, S M, Kim, D, Cho, B-K & Palsson, B O 2022, ' proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms ', Nucleic Acids Research, vol. 50, no. D1, pp. D1077-D1084 . https://doi.org/10.1093/nar/gkab1043
The transcriptional regulatory network in prokaryotes controls global gene expression mostly through transcription factors (TFs), which are DNA-binding proteins. Chromatin immunoprecipitation (ChIP) with DNA sequencing methods can identify TF binding
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8e7cf7195f1a3eb3ee60d546d3c4826b
https://escholarship.org/uc/item/9bw9q0q4
https://escholarship.org/uc/item/9bw9q0q4
Autor:
Reo Yoo, Saugat Poudel, Tahani Al Bulushi, Bernhard O. Palsson, Kevin Rychel, Siddharth Chauhan, Yuan Yuan, Anand V. Sastry, Cameron R. Lamoureux
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Chauhan, S M, Poudel, S, Rychel, K, Lamoureux, C, Yoo, R, Al Bulushi, T, Yuan, Y, Palsson, B O & Sastry, A V 2021, ' Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius ', Frontiers in Microbiology, vol. 12, 753521 . https://doi.org/10.3389/fmicb.2021.753521
Chauhan, S M, Poudel, S, Rychel, K, Lamoureux, C, Yoo, R, Al Bulushi, T, Yuan, Y, Palsson, B O & Sastry, A V 2021, ' Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius ', Frontiers in Microbiology, vol. 12, 753521 . https://doi.org/10.3389/fmicb.2021.753521
Dynamic cellular responses to environmental constraints are coordinated by the transcriptional regulatory network (TRN), which modulates gene expression. This network controls most fundamental cellular responses, including metabolism, motility, and s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::07e9a39bf7c1bab4506708b1298322d1
https://www.frontiersin.org/articles/10.3389/fmicb.2021.753521/full
https://www.frontiersin.org/articles/10.3389/fmicb.2021.753521/full
Autor:
Reo Yoo, Kevin Rychel, Saugat Poudel, Tahani Al-bulushi, Yuan Yuan, Siddharth Chauhan, Cameron Lamoureux, Bernhard O. Palsson, Anand Sastry
Publikováno v:
mSphere, Vol 7, Iss 2 (2022)
ABSTRACT Mycobacterium tuberculosis is one of the most consequential human bacterial pathogens, posing a serious challenge to 21st century medicine. A key feature of its pathogenicity is its ability to adapt its transcriptional response to environmen
Externí odkaz:
https://doaj.org/article/dcb8bad220fe40899fae48988afddcd3