A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing

Autor: Marco Fabbri, Valentina Paracchini, Henrik Westh, Mauro Petrillo, Paul Hammer, Barbara Raffael, Guy Van den Eede, Alexandre Angers-Loustau, Derya Aytan-Aktug, Alessandro Cestaro, Alice C. McHardy, Maddalena Querci, Christoph Endrullat, Catherine D. Carrillo, Silke Peter, Jean-Yves Madec, Erik Alm, John W. A. Rossen, Ivo Gut, Dafni-Maria Kagkli, Gemma L. Kay, Alison E. Mather, T. M. Coque, Kevin Vanneste, Thierry Naas, Kok-Gan Chan, Etienne Ruppé, Lukas M. Weber, Salvador Capella-Gutierrez, Robert Schlaberg, Arthur W. Pightling

Publikováno v: F1000Research, 10:80. F1000Research
Petrillo, M, Fabbri, M, Kagkli, D M, Querci, M, Van den Eede, G, Alm, E, Aytan, D, Capella-Gutierrez, S, Carrillo, C, Cestaro, A, Chan, K-G, Coque, T, Endrullat, C, Gut, I, Hammer, P, Kay, G L, Madec, J-Y, Mather, A E, McHardy, A C, Naas, T, Paracchini, V, Peter, S, Pightling, A, Raffael, B, Rossen, J, Ruppé, E, Schlaberg, R, Vanneste, K, Weber, L, Westh, H & Angers-Loustau, A 2021, ' A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing ', F1000Research, vol. 10, 80 . https://doi.org/10.12688/f1000research.39214.1

Next Generation Sequencing technologies significantly impact the field of Antimicrobial Resistance (AMR) detection and monitoring, with immediate uses in diagnosis and risk assessment. For this application and in general, considerable challenges rema

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::50c7dcf2caf2baa7d65a72af15dd1e82
https://research.rug.nl/en/publications/7fb855b6-5a63-4351-87fe-0fc0bc129525

MALDI-TOF mass spectrometry as a tool for the discrimination of high-risk Escherichia coli clones from phylogenetic groups B2 (ST131) and D (ST69, ST405, ST393)

Autor: Ângela Novais, João Peças Lopes, Clara Sousa, T. M. Coque, Luísa Peixe, A. Fernandez-Olmos, J. de Dios Caballero, Rafael Cantón, Helena Ramos

Publikováno v: European Journal of Clinical Microbiology & Infectious Diseases. 33:1391-1399

Reliable, quick and low-cost methods are needed for the early detection of multidrug-resistant and highly virulent high-risk B2 and D Escherichia coli clones or clonal complexes (HiRCC). Matrix-assisted laser desorption/ionisation time-of-flight mass

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::680f82e21d6edf7c00d38167594ed136
https://doi.org/10.1007/s10096-014-2071-5

High-density fecal Enterococcus faecium colonization in hospitalized patients is associated with the presence of the polyclonal subcluster CC17

Autor: Rafael Cantón, Patricia Ruiz-Garbajosa, Rob J. L. Willems, M. de Regt, T. M. Coque, Marc J. M. Bonten, Hermie J. M. Harmsen, F. Baquero

Publikováno v: European Journal of Clinical Microbiology & Infectious Diseases; Vol 31
European Journal of Clinical Microbiology & Infectious Diseases
European Journal of Clinical Microbiology & Infectious Diseases, 31(4), 519-522. SPRINGER

Enterococcus faecium belonging to the polyclonal subcluster CC17, with a typical ampicillin-resistant E. faecium (AREfm) phenotype, have become prevalent among nosocomial infections around the world. High-density intestinal AREfm colonization could b

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2ac676c49ad85aedac10df094d014f5c

In vitro activity of daptomycin against enterococci from nosocomial and community environments in Portugal

Autor: João Carlos Sousa, Luísa Peixe, T. M. Coque, Carla Novais

Publikováno v: Journal of Antimicrobial Chemotherapy. 54:964-966

testing method (version 3). Journal of Antimicrobial Chemotherapy 53, 713–28. 3. Andrews, J. M. (2001). The development of the BSAC standardized method of disc diffusion testing. Journal of Antimicrobial Chemotherapy 48, Suppl. S1, 29–42. 4. MacG

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::98bf54f81878043c59a867379833bc4a
https://doi.org/10.1093/jac/dkh432

Antimicrobial resistance among faecal enterococci from healthy individuals in Portugal

Autor: João Carlos Sousa, Carla Novais, Luísa Peixe, T. M. Coque

Publikováno v: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 12(11)

Analysis of 247 faecal enterococcal isolates from 99 healthy Portuguese individuals during 2001 revealed the presence of enterococci resistant to vancomycin (5%) and highly resistant to streptomycin (52%), kanamycin (40%) or gentamicin (11%). Most is

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eb6641cc06370e0a08728736c4c2940d
https://pubmed.ncbi.nlm.nih.gov/17002614