Zobrazeno 1 - 10
of 10
pro vyhledávání: '"T Chad Effler"'
Publikováno v:
PLoS ONE, Vol 7, Iss 11, p e50362 (2012)
Development and use of primer sets to amplify nucleic acid sequences of interest is fundamental to studies spanning many life science disciplines. As such, the validation of primer sets is essential. Several computer programs have been created to aid
Externí odkaz:
https://doaj.org/article/01dc16b1e71749d8b8fcb503bbc87470
Publikováno v:
PLoS ONE, Vol 7, Iss 8, p e44002 (2012)
Toxic cyanobacterial blooms have persisted in freshwater systems around the world for centuries and appear to be globally increasing in frequency and severity. Toxins produced by bloom-associated cyanobacteria can have drastic impacts on the ecosyste
Externí odkaz:
https://doaj.org/article/9c7aa51a451b4e7386daf41f8f6183d9
High-Performance Deep Learning Toolbox for Genome-Scale Prediction of Protein Structure and Function
Autor:
Mu Gao, Peik Lund-Andersen, Alex Morehead, Sajid Mahmud, Chen Chen, Xiao Chen, Nabin Giri, Raj S. Roy, Farhan Quadir, T. Chad Effler, Ryan Prout, Subil Abraham, Wael Elwasif, N. Quentin Haas, Jeffrey Skolnick, Jianlin Cheng, Ada Sedova
Publikováno v:
Workshop Mach Learn HPC Environ
Computational biology is one of many scientific disciplines ripe for innovation and acceleration with the advent of high-performance computing (HPC). In recent years, the field of machine learning has also seen significant benefits from adopting HPC
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dcf4dad9e4fcf57445a21c0660acc9c7
https://pubmed.ncbi.nlm.nih.gov/35112110
https://pubmed.ncbi.nlm.nih.gov/35112110
Autor:
Russell B Davidson, Jess Woods, T Chad Effler, Mathialakan Thavappiragasam, Julie C Mitchell, Jerry M Parks, Ada Sedova
Publikováno v:
Bioinformatics. 38:3297-3298
Summary Easy-to-use, open-source, general-purpose programs for modeling a protein structure from inter-atomic distances are needed for modeling from experimental data and refinement of predicted protein structures. OpenMDlr is an open-source Python p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d005659d271ed8868df73b77cea1ad04
https://doi.org/10.1093/bioinformatics/btac307
https://doi.org/10.1093/bioinformatics/btac307
Autor:
Dwayne A. Elias, Jerry M. Parks, T. Chad Effler, Mathialakan Thavappiragasam, Jess Woods, Ada Sedova, Russell B. Davidson
Publikováno v:
BCB
Protein structure prediction has become increasingly popular and successful in recent years. An essential step for fragment-free, template-free methods is the generation of a final three-dimensional protein model from a set of predicted amino acid co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::50024345243327967f7f2c56a7c7c21f
https://doi.org/10.1145/3459930.3469510
https://doi.org/10.1145/3459930.3469510
Publikováno v:
MCHPC@SC
Many high-performance systems now include different types of memory devices within the same compute platform to meet strict performance and cost constraints. Such heterogeneous memory systems often include an upper-level tier with better performance,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::762d7bced542f3ec2fc20522524682f7
https://doi.org/10.1109/mchpc51950.2020.00007
https://doi.org/10.1109/mchpc51950.2020.00007
Autor:
Tong Zhou, T. Chad Effler, Prasad A. Kulkarni, Adam P. Howard, Kshitij A. Doshi, Michael R. Jantz
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783319776095
ARCS
ARCS
Recent emergence of systems with multiple performance and capacity tiers of memory invites a fresh consideration of strategies for optimal placement of data into the various tiers. This work explores a variety of cross-layer strategies for managing a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e2205567a5ca9d12582dbc59b63575ee
https://doi.org/10.1007/978-3-319-77610-1_14
https://doi.org/10.1007/978-3-319-77610-1_14
Publikováno v:
Nature reviews. Microbiology. 12(7)
In marine environments, virus-mediated lysis of host cells leads to the release of cellular carbon and nutrients and is hypothesized to be a major driver of carbon recycling on a global scale. However, efforts to characterize the effects of viruses o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ed6c313b596a7b07e8af116897eb0c9e
https://pubmed.ncbi.nlm.nih.gov/25396723
https://pubmed.ncbi.nlm.nih.gov/25396723
Publikováno v:
PLoS ONE, Vol 7, Iss 11, p e50362 (2012)
PLoS ONE
PLoS ONE
Development and use of primer sets to amplify nucleic acid sequences of interest is fundamental to studies spanning many life science disciplines. As such, the validation of primer sets is essential. Several computer programs have been created to aid
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7dc4c3e51f2d8f4a557ebdf74d616518
https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23189198/pdf/?tool=EBI
https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23189198/pdf/?tool=EBI
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, Vol 13, Iss Suppl 12, p A5 (2012)
BMC Bioinformatics, Vol 13, Iss Suppl 12, p A5 (2012)
Background The Roseobacter clade is a widespread, metabolically versatile, and easily cultured lineage of marine microbes. Furthermore, cultured isolates are generally considered to be representative of the naturally occurring diversity in the enviro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::899e96ae69ee87654285ace0997fd929