PaxDb 5.0: curated protein quantification data suggests adaptive proteome changes in yeasts

Autor: Huang, Qingyao, Szklarczyk, Damian, Wang, Mingcong, Simonovic, Milan, von Mering, Christian

Publikováno v: In Molecular & Cellular Proteomics August 2023

Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments.

Autor: Gable, Annika L¹ (AUTHOR), Szklarczyk, Damian^1,2 (AUTHOR), Lyon, David^1,2 (AUTHOR), Rodrigues, João F Matias¹ (AUTHOR), Mering, Christian von^1,2 (AUTHOR) mering@imls.uzh.ch

Publikováno v: Briefings in Bioinformatics. Sep2022, Vol. 23 Issue 5, p1-13. 13p.

eggNOG 6.0: enabling comparative genomics across 12 535 organisms

Autor: Hernández-Plaza, Ana, Szklarczyk, Damian, Botas, Jorge, Cantalapiedra, Carlos P, Giner-Lamia, Joaquín, Mende, Daniel R, Kirsch, Rebecca, Rattei, Thomas, Letunic, Ivica, Jensen, Lars J, Bork, Peer, von Mering, Christian, Huerta-Cepas, Jaime

Publikováno v: Nucleic acids research, 51(1 D), D389-D394. Oxford University Press
Hernández-Plaza, A, Szklarczyk, D, Botas, J, Cantalapiedra, C P, Giner-Lamia, J, Mende, D R, Kirsch, R, Rattei, T, Letunic, I, Jensen, L J, Bork, P, von Mering, C & Huerta-Cepas, J 2023, ' eggNOG 6.0 : enabling comparative genomics across 12 535 organisms ', Nucleic Acids Research, vol. 51, no. D1, pp. D389-D394 . https://doi.org/10.1093/nar/gkac1022

6 Pág.
The eggNOG (evolutionary gene genealogy Non-supervised Orthologous Groups) database is a bioinformatics resource providing orthology data and comprehensive functional information for organisms from all domains of life. Here, we present a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c9768b1ad1577dfd3cb17663924690b5
https://pure.amc.nl/en/publications/eggnog-60(221d7b33-82d9-4f79-ad2d-89dd87955837).html

The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest

Autor: Szklarczyk, Damian, Kirsch, Rebecca, Koutrouli, Mikaela, Nastou, Katerina, Mehryary, Farrokh, Hachilif, Radja, Gable, Annika L, Fang, Tao, Doncheva, Nadezhda T, Pyysalo, Sampo, Bork, Peer, Jensen, Lars J, von Mering, Christian

Publikováno v: Szklarczyk, D, Kirsch, R, Koutrouli, M, Nastou, K, Mehryary, F, Hachilif, R, Gable, A L, Fang, T, Doncheva, N T, Pyysalo, S, Bork, P, Jensen, L J & von Mering, C 2023, ' The STRING database in 2023 : protein-protein association networks and functional enrichment analyses for any sequenced genome of interest ', Nucleic Acids Research, vol. 51, no. D1, pp. D638-D646 . https://doi.org/10.1093/nar/gkac1000

Much of the complexity within cells arises from functional and regulatory interactions among proteins. The core of these interactions is increasingly known, but novel interactions continue to be discovered, and the information remains scattered acros

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7b1d36ab9281dd37c447e67be99ea730
http://edoc.mdc-berlin.de/22652/1/22652oa.pdf

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