Zobrazeno 1 - 10
of 47
pro vyhledávání: '"Swaraj Basu"'
Autor:
Giuseppe Petrosino, Giovanna Ponte, Massimiliano Volpe, Ilaria Zarrella, Federico Ansaloni, Concetta Langella, Giulia Di Cristina, Sara Finaurini, Monia T. Russo, Swaraj Basu, Francesco Musacchia, Filomena Ristoratore, Dinko Pavlinic, Vladimir Benes, Maria I. Ferrante, Caroline Albertin, Oleg Simakov, Stefano Gustincich, Graziano Fiorito, Remo Sanges
Publikováno v:
BMC Biology, Vol 20, Iss 1, Pp 1-22 (2022)
Abstract Background Transposable elements (TEs) widely contribute to the evolution of genomes allowing genomic innovations, generating germinal and somatic heterogeneity, and giving birth to long non-coding RNAs (lncRNAs). These features have been as
Externí odkaz:
https://doaj.org/article/5a4f5e2abbe84e76a357fa933809c704
Autor:
Örjan Persson, Yazh Muthukumar, Swaraj Basu, Louise Jenninger, Jay P. Uhler, Anna-Karin Berglund, Robert McFarland, Robert W. Taylor, Claes M. Gustafsson, Erik Larsson, Maria Falkenberg
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-10 (2019)
Large-scale deletions of mitochondrial DNA (mtDNA) are associated with different human mitochondrial diseases and normal human ageing. Here the authors present a model for mtDNA formation based on generation sequencing analysis of patients samples an
Externí odkaz:
https://doaj.org/article/9d0cf8b3b0044c29ad782cb60959b619
Autor:
Swaraj Basu, Xie Xie, Jay P Uhler, Carola Hedberg-Oldfors, Dusanka Milenkovic, Olivier R Baris, Sammy Kimoloi, Stanka Matic, James B Stewart, Nils-Göran Larsson, Rudolf J Wiesner, Anders Oldfors, Claes M Gustafsson, Maria Falkenberg, Erik Larsson
Publikováno v:
PLoS Genetics, Vol 16, Iss 12, p e1009242 (2020)
Deletions and duplications in mitochondrial DNA (mtDNA) cause mitochondrial disease and accumulate in conditions such as cancer and age-related disorders, but validated high-throughput methodology that can readily detect and discriminate between thes
Externí odkaz:
https://doaj.org/article/b37608b27ed04fa5a6f640ac89a4920d
Autor:
Swaraj Basu, Erik Larsson
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 8, Iss 6, Pp 2019-2025 (2018)
Antisense transcripts and other long non-coding RNAs are pervasive in mammalian cells, and some of these molecules have been proposed to regulate proximal protein-coding genes in cis. For example, non-coding transcription can contribute to inactivati
Externí odkaz:
https://doaj.org/article/bbe9e7341ded4a94b57bc19c5cc727d0
Autor:
Sara Carmela Credendino, Nicole Lewin, Miriane de Oliveira, Swaraj Basu, Barbara D’Andrea, Elena Amendola, Luigi Di Guida, Antonio Nardone, Remo Sanges, Mario De Felice, Gabriella De Vita
Publikováno v:
International Journal of Genomics, Vol 2017 (2017)
lncRNAs are acquiring increasing relevance as regulators in a wide spectrum of biological processes. The extreme heterogeneity in the mechanisms of action of these molecules, however, makes them very difficult to study, especially regarding their mol
Externí odkaz:
https://doaj.org/article/d4e975f2fec64975b68919f1e3dd939b
Publikováno v:
PLoS Genetics, Vol 12, Iss 12, p e1006506 (2016)
Identification of cancer driver genes using somatic mutation patterns indicative of positive selection has become a major goal in cancer genomics. However, cancer cells additionally depend on a large number of genes involved in basic cellular process
Externí odkaz:
https://doaj.org/article/f66e2f3c955b4c8a9d1eeea6b94cb4a1
Autor:
Gabriella De Vita, Mario De Felice, Alfredo Fusco, Nadia Tinto, Myriam Decaussin-Petrucci, Romina Sepe, Swaraj Basu, Remo Sanges, Elena Amendola, Nicole Lewin, Maria L. Bellone, Sara C. Credendino
Supplementary tables S1-S5. Tab S1: Oligonucleo1des used as primers for qRT-PCR; Tab S2: Oligonucleo1des used for cloning in either reporter or expression vectors. Only gene-specific sequences are reported; Tab S3: Klhl-14-AS specific oligonucleo1des
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a950c856d3d44c4ccda210c3a1e6f8f7
https://doi.org/10.1158/0008-5472.22422197.v1
https://doi.org/10.1158/0008-5472.22422197.v1
Autor:
Gabriella De Vita, Mario De Felice, Alfredo Fusco, Nadia Tinto, Myriam Decaussin-Petrucci, Romina Sepe, Swaraj Basu, Remo Sanges, Elena Amendola, Nicole Lewin, Maria L. Bellone, Sara C. Credendino
Supplementary figures S1-S7. Fig S1. Klhl14-AS is down-regulated in thyroid cancer in a MAPK-dependent manner; Fig S2. A. Rat Klhl14-AS alternative transcripts as reported by Ensembl (Rnor_6). B, C Klhl14-AS was knocked-down in FRTL-5 using LNA Gapme
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::253b4c4744017f66bf1f515a1e5f3e85
https://doi.org/10.1158/0008-5472.22422200.v1
https://doi.org/10.1158/0008-5472.22422200.v1
Autor:
Gabriella De Vita, Mario De Felice, Alfredo Fusco, Nadia Tinto, Myriam Decaussin-Petrucci, Romina Sepe, Swaraj Basu, Remo Sanges, Elena Amendola, Nicole Lewin, Maria L. Bellone, Sara C. Credendino
Klhl14-AS is a long noncoding RNA expressed since early specification of thyroid bud and is the most enriched gene in the mouse thyroid primordium at E10.5. Here, we studied its involvement in thyroid carcinogenesis by analyzing its expression in can
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::847a6488f51f9f25a7d9e2a92529ec6e
https://doi.org/10.1158/0008-5472.c.6511151.v1
https://doi.org/10.1158/0008-5472.c.6511151.v1
Autor:
Iris Hardege, Taihong Wu, He Liu, Julia Morud, Yun Zhang, Myung-Kyu Choi, William R Schafer, Swaraj Basu
Pentameric ligand-gated ion channels (LGICs) play conserved, critical roles in both excitatory and inhibitory synaptic transmission and can be activated by diverse neurochemical ligands. We have performed a characterization of orphan channels from th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2ce13b8cdd4369132e4d1783bc1d3653
https://lirias.kuleuven.be/handle/123456789/685099
https://lirias.kuleuven.be/handle/123456789/685099