Zobrazeno 1 - 10
of 54
pro vyhledávání: '"Suzanne M. Paley"'
Autor:
Lisa R. Moore, Ron Caspi, Douglas A. Campbell, John R. Casey, Sophie Crevecoeur, David J. Lea-Smith, Bin Long, Naaman M. Omar, Suzanne M. Paley, Nicolas M. Schmelling, Alejandro Torrado, Jonathan P. Zehr, Peter D. Karp
Publikováno v:
Frontiers in Microbiology, Vol 15 (2024)
CyanoCyc is a web portal that integrates an exceptionally rich database collection of information about cyanobacterial genomes with an extensive suite of bioinformatics tools. It was developed to address the needs of the cyanobacterial research and b
Externí odkaz:
https://doaj.org/article/9d9a660bb9a24a14af33a398e0dbb1fb
Autor:
Angela Xu, Suzanne M. Paley, William P Dwyer, Benjamin J. Cole, Daniel Ginzburg, Bo Xue, Charles Hawkins, Seung Y. Rhee, Kangmei Zhao, Peter D. Karp, Selena L Rice
Publikováno v:
Journal of integrative plant biologyREFERENCES. 63(11)
To understand and engineer plant metabolism, we need a comprehensive and accurate annotation of all metabolic information across plant species. As a step towards this goal, we generated genome-scale metabolic pathway databases of 126 algal and plant
Autor:
Ingrid M. Keseler, Ron Caspi, Peter D. Karp, Markus Krummenacker, Richard Billington, Anamika Kothari, Wai Kit Ong, Pallavi Subhraveti, Suzanne M. Paley, Peter E. Midford
Publikováno v:
Nucleic Acids Research
MetaCyc (MetaCyc.org) is a comprehensive reference database of metabolic pathways and enzymes from all domains of life. It contains 2749 pathways derived from more than 60 000 publications, making it the largest curated collection of metabolic pathwa
Autor:
Suzanne M. Paley, Peter D. Karp
Publikováno v:
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-13 (2019)
BMC Bioinformatics
BMC Bioinformatics
Background High-throughput experiments can bring to light associations between genes, proteins and/or metabolites, many of which will be explainable by existing knowledge. Our aim is to speed elucidation of such explanations and, in some cases, find
Autor:
Peter D. Karp, Suzanne M. Paley
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-6 (2021)
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-6 (2021)
Background The Metabolic Network Explorer is a new addition to the BioCyc.org website and the Pathway Tools software suite that supports the interactive exploration of metabolic networks. Any metabolic network visualization tool must by necessity sho
Autor:
Daniel Ginzburg, Suzanne M. Paley, Charles Hawkins, Angela Xu, Kangmei Zhao, Seung Y. Rhee, Benjamin J. Cole, Bo Xue, William P Dwyer, Peter D. Karp, Selena L Rice
Plant metabolism is a pillar of our ecosystem, food security, and economy. To understand and engineer plant metabolism, we first need a comprehensive and accurate annotation of all metabolic information across plant species. As a step towards this go
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1adfa6b6abe0070667861efb4dfc6fd2
https://doi.org/10.1101/2021.03.30.437738
https://doi.org/10.1101/2021.03.30.437738
Publikováno v:
Frontiers in Microbiology
Frontiers in Microbiology, Vol 12 (2021)
Frontiers in Microbiology, Vol 12 (2021)
Updating genome databases to reflect newly published molecular findings for an organism was hard enough when only a single strain of a given organism had been sequenced. With multiple sequenced strains now available for many organisms, the challenge
Publikováno v:
Metabolites, Vol 11, Iss 64, p 64 (2021)
Metabolites
Volume 11
Issue 2
Metabolites
Volume 11
Issue 2
Metabolomics, synthetic biology, and microbiome research demand information about organism-scale metabolic networks. The convergence of genome sequencing and computational inference of metabolic networks has enabled great progress toward satisfying t
Autor:
Paul E. O'Maille, Suzanne M. Paley, Jean-Francois Tomb, Karen Parker, Aaron Spaulding, Peter D. Karp
Publikováno v:
Nucleic Acids Research
The Omics Dashboard is a software tool for interactive exploration and analysis of gene-expression datasets. The Omics Dashboard is organized as a hierarchy of cellular systems. At the highest level of the hierarchy the Dashboard contains graphical p
Autor:
Markus Krummenacker, Wai Kit Ong, Mario Latendresse, Peter D. Karp, Anamika Kothari, Pallavi Subhraveti, Carol A. Fulcher, Quang Ong, Peter E. Midford, Richard Billington, Ingrid M. Keseler, Ron Caspi, Suzanne M. Paley
Publikováno v:
Nucleic Acids Research
MetaCyc (https://MetaCyc.org) is a comprehensive reference database of metabolic pathways and enzymes from all domains of life. It contains more than 2570 pathways derived from >54 000 publications, making it the largest curated collection of metabol