Domain Adapted Multi-task Learning For Segmenting Amoeboid Cells in Microscopy

Autor: Suvadip Mukherjee, Rituparna Sarkar, Maria Manich, Elisabeth Labruyere, Jean-Christophe Olivo-Marin

Publikováno v: IEEE Transactions on Medical Imaging
IEEE Transactions on Medical Imaging, 2022, pp.1-1. ⟨10.1109/TMI.2022.3203022⟩

International audience; The method proposed in this paper is a robust combination of multi-task learning and unsupervised domain adaptation for segmenting amoeboid cells in microscopy. A highlight of this work is the manner in which the model’s hyp

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::78675e33028e0f915e01648f875eb038
https://hal-pasteur.archives-ouvertes.fr/pasteur-03812027

Generalizing the Statistical Analysis of Objects’ Spatial Coupling in Bioimaging

Autor: Thibault Lagache, Lydia Danglot, Catalina Gonzalez-Gomez, Jean-Christophe Olivo-Marin, Suvadip Mukherjee

Publikováno v: IEEE Signal Processing Letters
IEEE Signal Processing Letters, 2020, 27, pp.1085-1089. ⟨10.1109/LSP.2020.3003821⟩
IEEE Signal Processing Letters, Institute of Electrical and Electronics Engineers, 2020, 27, pp.1085-1089. ⟨10.1109/LSP.2020.3003821⟩

International audience; We introduce a novel paradigm for statistical analysis of spatial signals, applied to colocalization studies in bioimag-ing. Quantitative assessment of the spatial colocalization of different molecules in microscopy provides i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df8070948ce5559fe53e72ab0c5e2a5c
https://doi.org/10.1109/lsp.2020.3003821

A Robust and Versatile Framework to Compare Spike Detection Methods in Calcium Imaging of Neuronal Activity

Autor: Jean-Christophe Olivo-Marin, Suvadip Mukherjee, Thibault Lagache, Samuel Kubler

Publikováno v: ISBI
2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)
2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), Apr 2021, Nice, France. pp.375-379, ⟨10.1109/ISBI48211.2021.9433951⟩

International audience; Calcium fluorescence imaging enables real-time activity monitoring of single neurons in living animals. A critical inverse problem resides in the precise inference of spike locations from noisy fluorescence traces, especially

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa9d7f51856c546e1d730ba7a8ddff75
https://doi.org/10.1109/isbi48211.2021.9433951

Dictionary Learning Level Set

Autor: Scott T. Acton, Suvadip Mukherjee, Rituparna Sarkar

Publikováno v: IEEE Signal Processing Letters. 22:2034-2038

We propose a novel region based segmentation technique using dictionary learning. In a previous work we have developed a method which uses a set of pre-specified Legendre basis functions to perform region based segmentation of an object in presence o

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::2d7366496a88fffa57467c8bb183c65b
https://doi.org/10.1109/lsp.2015.2454991

Computer Vision, Graphics, and Image Processing : ICVGIP 2016 Satellite Workshops, WCVA, DAR, and MedImage, Guwahati, India, December 19, 2016 Revised Selected Papers

Autor: Snehasis Mukherjee, Suvadip Mukherjee, Dipti Prasad Mukherjee, Jayanthi Sivaswamy, Suyash Awate, Srirangaraj Setlur, Anoop M. Namboodiri, Santanu Chaudhury

This book constitutes the refereed conference proceedings of the ICVGIP 2016 Satellite Workshops, WCVA, DAR, and MedImage, held in Guwahati, India, in December 2016. The papers presented are extended versions of the papers of three of the four works