In-field genetic stock identification of overwintering coho salmon in the Gulf of Alaska: Evaluation of Nanopore sequencing for remote real-time deployment

Autor: Terry D. Beacham, Christoph M. Deeg, Kelsey Flynn, Colin G. Wallace, Kimberly L. Jonsen, Eric Rondeau, Sutherland Bjg, Kristina M. Miller, Tobi Ming

Genetic stock identification (GSI) by single nucleotide polymorphism (SNP) sequencing has become the gold standard for stock identification in Pacific salmon, which are found in mixed-stocks during the oceanic phase of their lifecycle. Sequencing pla

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::4118347503d5726c1126a9e9163a8511
https://doi.org/10.1101/2021.05.27.445905

Loss of genetic variation and ancestral sex determination system in North American northern pike characterized by whole-genome resequencing.

Autor: Johnson HA; Department of Biology, Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W 3N5, Canada., Rondeau EB; Department of Biology, Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W 3N5, Canada., Sutherland BJG; Department of Biology, Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W 3N5, Canada.; Sutherland Bioinformatics, Lantzville V0R 2H0, British Columbia, Canada., Minkley DR; Department of Biology, Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W 3N5, Canada., Leong JS; Department of Biology, Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W 3N5, Canada., Whitehead J; Department of Biology, Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W 3N5, Canada., Despins CA; Department of Biology, Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W 3N5, Canada., Gowen BE; Department of Biology, Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W 3N5, Canada., Collyard BJ; Alaska Department of Fish and Game, Division of Sport Fish, 1300 College Rd, Fairbanks, AK 99701-1599, USA., Whipps CM; Center for Applied Microbiology, Department of Environmental Biology, SUNY College of Environmental Science and Forestry, Syracuse, NY 13210, USA., Farrell JM; Thousand Island Biological Station, Department of Environmental and Forest Biology, SUNY College of Environmental Science and Forestry, Syracuse, NY 13210, USA., Koop BF; Department of Biology, Centre for Biomedical Research, University of Victoria, Victoria, British Columbia V8W 3N5, Canada.

Publikováno v: G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Oct 07; Vol. 14 (10).

The prokaryotic and eukaryotic microbiome of Pacific oyster spat is shaped by ocean warming but not acidification.

Autor: Zhong KX; Department of Earth, Ocean, and Atmospheric Sciences, The University of British Columbia, Vancouver, British Columbia, Canada., Chan AM; Department of Earth, Ocean, and Atmospheric Sciences, The University of British Columbia, Vancouver, British Columbia, Canada., Collicutt B; Hakai Institute, Heriot Bay, British Columbia, Canada., Daspe M; Department of Earth, Ocean, and Atmospheric Sciences, The University of British Columbia, Vancouver, British Columbia, Canada., Finke JF; Department of Earth, Ocean, and Atmospheric Sciences, The University of British Columbia, Vancouver, British Columbia, Canada.; Hakai Institute, Heriot Bay, British Columbia, Canada., Foss M; Hakai Institute, Heriot Bay, British Columbia, Canada., Green TJ; Centre for Shellfish Research, Vancouver Island University, Nanaimo, British Columbia, Canada.; Department of Fisheries and Aquaculture, Vancouver Island University, Nanaimo, British Columbia, Canada., Harley CDG; Department of Zoology, The University of British Columbia, Vancouver, British Columbia, Canada.; Institute for the Oceans and Fisheries, The University of British Columbia, Vancouver, British Columbia, Canada., Hesketh AV; Department of Zoology, The University of British Columbia, Vancouver, British Columbia, Canada., Miller KM; Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, British Columbia, Canada., Otto SP; Department of Zoology, The University of British Columbia, Vancouver, British Columbia, Canada., Rolheiser K; Hakai Institute, Heriot Bay, British Columbia, Canada., Saunders R; RKS Labs, Parksville, British Columbia, Canada., Sutherland BJG; Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, British Columbia, Canada., Suttle CA; Department of Earth, Ocean, and Atmospheric Sciences, The University of British Columbia, Vancouver, British Columbia, Canada.; Institute for the Oceans and Fisheries, The University of British Columbia, Vancouver, British Columbia, Canada.; Department of Microbiology and Immunology, The University of British Columbia, Vancouver, British Columbia, Canada.; Department of Botany, The University of British Columbia, Vancouver, British Columbia, Canada.

Publikováno v: Applied and environmental microbiology [Appl Environ Microbiol] 2024 Apr 17; Vol. 90 (4), pp. e0005224. Date of Electronic Publication: 2024 Mar 11.

Genomic diversity of wild and cultured Yesso scallop Mizuhopecten yessoensis from Japan and Canada.

Autor: Sutherland BJG; Faculty of Science and Technology, Vancouver Island University, Nanaimo, British Columbia V9R 5S5, Canada.; Sutherland Bioinformatics, Lantzville, British Columbia V0R 2H0, Canada., Itoh N; Laboratory of Fish Diseases, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan., Gilchrist K; Faculty of Science and Technology, Vancouver Island University, Nanaimo, British Columbia V9R 5S5, Canada., Boyle B; Plateforme d'Analyses Génomiques, Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Quebec, Quebec G1V 0A6, Canada., Roth M; BC Ministry of Agriculture and Food, Victoria, British Columbia V8W 9B4, Canada., Green TJ; Faculty of Science and Technology, Vancouver Island University, Nanaimo, British Columbia V9R 5S5, Canada.

Publikováno v: G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Dec 06; Vol. 13 (12).

In-field genetic stock identification of overwintering coho salmon in the Gulf of Alaska: Evaluation of Nanopore sequencing for remote real-time deployment.

Autor: Deeg CM; Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia, Canada.; Pacific Salmon Foundation, Vancouver, British Columbia, Canada., Sutherland BJG; Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, British Columbia, Canada., Ming TJ; Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, British Columbia, Canada., Wallace C; Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, British Columbia, Canada., Jonsen K; Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, British Columbia, Canada., Flynn KL; Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, British Columbia, Canada., Rondeau EB; Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, British Columbia, Canada., Beacham TD; Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, British Columbia, Canada., Miller KM; Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia, Canada.; Fisheries and Oceans Canada, Pacific Biological Station, Nanaimo, British Columbia, Canada.

Publikováno v: Molecular ecology resources [Mol Ecol Resour] 2022 Jul; Vol. 22 (5), pp. 1824-1835. Date of Electronic Publication: 2022 Feb 24.