Setting up a data management infrastructure for bioimaging

Autor: Susanne Kunis, Karen Bernhardt, Michael Hensel

Publikováno v: Biological Chemistry. 404:433-439

While the FAIR (Findable, Accessible, Interoperable, and Re-usable) principles are well accepted in the scientific community, there are still many challenges in implementing them in the day-to-day scientific process. Data management of microscopy ima

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::611bf34f00b56dc036b9d7a6e9e9c25b
https://doi.org/10.1515/hsz-2022-0304

Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications

Autor: James J. Chambers, Karl D. Bellve, Glyn Nelson, Claire M. Brown, Serkan Utku Öztürk, Willa Y. Ma, Jaime A. Pimentel, Orestis Faklaris, Michelle S. Itano, Mathias Hammer, Daniel P. Keeley, Marco Marcello, David Grunwald, Ulrike Boehm, Alessandro Rigano, Koray Kirli, Caterina Strambio-De-Castillia, Alexander Balashov, Alex Laude, Shannon Ehmsen, Judith Lacoste, Joel Ryan, Robert A. Coleman, Burak H. Alver, Stefanie Weidtkamp-Peters, Anna B Hamacher, Susanne Kunis, Roland Nitschke, Paula Montero-Llopis, Andrea Cosolo, Thomas Guilbert, Peter J. Park, Kevin E. Fogarty

Publikováno v: Nature Methods

For quality, interpretation, reproducibility and sharing value, microscopy images should be accompanied by detailed descriptions of the conditions that were used to produce them. Micro-Meta App is an intuitive, highly interoperable, open-source softw

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bbdce25ab751ee657049d9d950016d72
https://pubmed.ncbi.nlm.nih.gov/34952955

QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Autor: Glyn Nelson, Ulrike Boehm, Steve Bagley, Peter Bajcsy, Johanna Bischof, Brown, Claire M., Aurelien Dauphin, Dobbie, Ian M., Eriksson, John E., Orestis Faklaris, Julia Fernandez-Rodriguez, Alexia Ferrand, Laurent Gelman, Ali Gheisari, Hella Hartmann, Christian Kukat, Alex Laude, Miso Mitkovski, Sebastian Munck, North, Alison J., Rasse, Tobias M., Ute Resch-Genger, Schuetz, Lucas C., Arne Seitz, Caterina Strambio-De-Castillia, Swedlow, Jason R., Ioannis Alexopoulos, Karin Aumayr, Sergiy Avilov, Gert-Jan Bakker, Bammann, Rodrigo R., Andrea Bassi, Hannes Beckert, Sebastian Beer, Yury Belyaev, Jakob Bierwagen, Birngruber, Konstantin A., Manel Bosch, Juergen Breitlow, Cameron, Lisa A., Joe Chalfoun, Chambers, James J., Chieh-Li Chen, Eduardo Conde-Sousa, Corbett, Alexander D., Cordelieres, Fabrice P., Elaine del Nery, Ralf Dietzel, Frank Eismann, Elnaz Fazeli, Andreas Felscher, Hans Fried, Nathalie Gaudreault, Wah Ing Goh, Thomas Guilbert, Roland Hadleigh, Peter Hemmerich, Holst, Gerhard A., Itano, Michelle S., Jaffe, Claudia B., Jambor, Helena K., Jarvis, Stuart C., Antje Keppler, David Kirchenbuechler, Marcel Kirchner, Norio Kobayashi, Gabriel Krens, Susanne Kunis, Judith Lacoste, Marco Marcello, Martins, Gabriel G., Metcalf, Daniel J., Mitchell, Claire A., Joshua Moore, Tobias Mueller, Nelson, Michael S., Stephen Ogg, Shuichi Onami, Palmer, Alexandra L., Perrine Paul-Gilloteaux, Pimentel, Jaime A., Laure Plantard, Santosh Podder, Elton Rexhepaj, Michael Royeck, Arnaud Royon, Saari, Markku A., Damien Schapman, Vincent Schoonderwoert, Britta Schroth-Diez, Stanley Schwartz, Michael Shaw, Martin Spitaler, Stoeckl, Martin T., Damir Sudar, Jeremie Teillon, Stefan Terjung, Roland Thuenauer, Wilms, Christian D., Wright, Graham D., Roland Nitschke

Publikováno v: J Microsc
Journal of Microscopy
Journal of Microscopy, 284, 1, pp. 56-73
HAL
Journal of Microscopy, 284, 56-73
Journal of microscopy 284(1), 56-73 (2021). doi:10.1111/jmi.13041

In April 2020, the QUality Assessment and REProducibility for Instruments and Images in Light Microscopy (QUAREP-LiMi) initiative was formed. This initiative comprises imaging scientists from academia and industry who share a common interest in achie

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e8e185abb968d014bf8c4eb65e376f26

The nonequispaced FFT on graphics processing units

Autor: Susanne Kunis, Stefan Kunis

Publikováno v: PAMM. 12:7-10

Without doubt, the fast Fourier transform (FFT) belongs to the algorithms with large impact on science and engineering. By appropriate approximations, this scheme has been generalized for arbitrary spatial sampling points. This so called nonequispace

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::395ea347270ac760de7cb8f87c1bd480
https://doi.org/10.1002/pamm.201210003