Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Supriya Khedkar"'
Autor:
Askarbek Orakov, Anthony Fullam, Luis Pedro Coelho, Supriya Khedkar, Damian Szklarczyk, Daniel R. Mende, Thomas S. B. Schmidt, Peer Bork
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-19 (2021)
Abstract Genomes are critical units in microbiology, yet ascertaining quality in prokaryotic genome assemblies remains a formidable challenge. We present GUNC (the Genome UNClutterer), a tool that accurately detects and quantifies genome chimerism ba
Externí odkaz:
https://doaj.org/article/34648596e6014e92a141c38319336404
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 6, Iss 6, Pp 1597-1606 (2016)
Genomes evolve not only in base sequence but also in terms of their architecture, defined by gene organization and chromosome topology. Whereas genome sequence data inform us about the changes in base sequences for a large variety of organisms, the s
Externí odkaz:
https://doaj.org/article/1ea142720cdd44ebb29b812f98ae784f
Publikováno v:
mSphere, Vol 2, Iss 6 (2017)
ABSTRACT Horizontal gene transfer is a major driving force behind the genomic diversity seen in prokaryotes. The cryptic rac prophage in Escherichia coli K-12 carries the gene for a putative transcription factor RacR, whose deletion is lethal. We hav
Externí odkaz:
https://doaj.org/article/fced5eda6091438eaaf243903479c192
Autor:
Sushma Prabhakara, Supriya Khedkar, Srikanth Mairpady Shambat, Rajalakshmi Srinivasan, Atanu Basu, Anna Norrby-Teglund, Aswin Sai Narain Seshasayee, Gayathri Arakere
Publikováno v:
PLoS ONE, Vol 8, Iss 3, p e60013 (2013)
Staphylococcus aureus is a major human pathogen, first recognized as a leading cause of hospital-acquired infections. Community-associated S. aureus (CA-SA) pose a greater threat due to increase in severity of infection and disease among children and
Externí odkaz:
https://doaj.org/article/47c9bb82c9bf47cba1b5416d57bed179
Autor:
Rita Patil, Supriya Khedkar
Publikováno v:
International Journal of Advanced Community Medicine. 5:01-05
Autor:
Orsolya Barabas, Georgy Smyshlyaev, Buse Isbilir, Supriya Khedkar, Carlos Rojas‐Cordova, Alex G. Bateman, Peer Bork
Publikováno v:
The FASEB Journal. 36
Autor:
Anthony Fullam, Ivica Letunic, Thomas S B Schmidt, Quinten R Ducarmon, Nicolai Karcher, Supriya Khedkar, Michael Kuhn, Martin Larralde, Oleksandr M Maistrenko, Lukas Malfertheiner, Alessio Milanese, Joao Frederico Matias Rodrigues, Claudia Sanchis-López, Christian Schudoma, Damian Szklarczyk, Shinichi Sunagawa, Georg Zeller, Jaime Huerta-Cepas, Christian von Mering, Peer Bork, Daniel R Mende
Publikováno v:
Nucleic acids research, 51(D1), D760-D766. Oxford University Press
Nucleic Acids Research, 51 (D1)
Nucleic Acids Research, 51 (D1)
7 Pág.
The interpretation of genomic, transcriptomic and other microbial 'omics data is highly dependent on the availability of well-annotated genomes. As the number of publicly available microbial genomes continues to increase exponentially, t
The interpretation of genomic, transcriptomic and other microbial 'omics data is highly dependent on the availability of well-annotated genomes. As the number of publicly available microbial genomes continues to increase exponentially, t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::96ceca1546f3e14bdfc0586a783af884
https://www.vliz.be/imisdocs/publications/34/386734.pdf
https://www.vliz.be/imisdocs/publications/34/386734.pdf
Autor:
Luis Pedro Coelho, Renato Alves, Álvaro Rodríguez del Río, Pernille Neve Myers, Carlos P. Cantalapiedra, Joaquín Giner-Lamia, Thomas Sebastian Schmidt, Daniel R. Mende, Askarbek Orakov, Ivica Letunic, Falk Hildebrand, Thea Van Rossum, Sofia K. Forslund, Supriya Khedkar, Oleksandr M. Maistrenko, Shaojun Pan, Longhao Jia, Pamela Ferretti, Shinichi Sunagawa, Xing-Ming Zhao, Henrik Bjørn Nielsen, Jaime Huerta-Cepas, Peer Bork
Publikováno v:
Digital.CSIC. Repositorio Institucional del CSIC
instname
Nature
instname
Nature
Funding was provided by the European Union’s Horizon 2020 Research and Innovation Programme (grant 686070: DD-DeCaF to P.B.) and Marie Skłodowska-Curie Actions (grant 713673 to A.R.d.R.), the European Research Council (ERC) MicrobioS (ERC-AdG-6698
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::95a951d2db034e39872cb6ce05b2e38c
http://hdl.handle.net/10261/274685
http://hdl.handle.net/10261/274685
Autor:
Supriya Khedkar, Thomas Schmidt, Askarbek Nurlanuly Orakov, Luis Pedro Coelho, Daniel R. Mende, Anthony Fullam, Damian Szklarczyk, Peer Bork
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-19 (2021)
Genome Biology
Genome Biology
Genomes are critical units in microbiology, yet ascertaining quality in prokaryotic genomes remains a formidable challenge. We present GUNC (the Genome UNClutterer), a tool that accurately detects and quantifies genome chimerism based on the lineage
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::428ce122bbc49f906fdd2ee2c98a9864
http://edoc.mdc-berlin.de/20358/1/20358oa.pdf
http://edoc.mdc-berlin.de/20358/1/20358oa.pdf
Autor:
Revathy Krishnamurthi, Swagatha Ghosh, Supriya Khedkar, Aswin Sai Narain Seshasayee, Craig D. Ellermeier
Publikováno v:
mSphere, Vol 2, Iss 6 (2017)
mSphere, Vol 2, Iss 6, p e00392-17 (2017)
mSphere
MSPHERE
mSphere, Vol 2, Iss 6, p e00392-17 (2017)
mSphere
MSPHERE
Transcription factors in the bacterium E. coli are rarely essential, and when they are essential, they are largely toxin-antitoxin systems. While studying transcription factors encoded in horizontally acquired regions in E. coli, we realized that the