Zobrazeno 1 - 10
of 23
pro vyhledávání: '"Sung-kyu Robin Park"'
Autor:
Liwei Cao, Matthias Pauthner, Raiees Andrabi, Kimmo Rantalainen, Zachary Berndsen, Jolene K. Diedrich, Sergey Menis, Devin Sok, Raiza Bastidas, Sung-Kyu Robin Park, Claire M. Delahunty, Lin He, Javier Guenaga, Richard T. Wyatt, William R. Schief, Andrew B. Ward, John R. Yates, Dennis R. Burton, James C. Paulson
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-14 (2018)
HIV envelope (Env) is a potential vaccine antigen and its N-glycans are part of the epitope of broadly neutralizing antibodies. Here, the authors show that glycosylation of Env from infectious virus closely matches Env from recombinant membrane-bound
Externí odkaz:
https://doaj.org/article/4f20b420b7274e21b3fd2be2a1aa131b
Autor:
Liwei Cao, Jolene K. Diedrich, Daniel W. Kulp, Matthias Pauthner, Lin He, Sung-Kyu Robin Park, Devin Sok, Ching Yao Su, Claire M. Delahunty, Sergey Menis, Raiees Andrabi, Javier Guenaga, Erik Georgeson, Michael Kubitz, Yumiko Adachi, Dennis R. Burton, William R. Schief, John R. Yates III, James C. Paulson
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-13 (2017)
The analysis of site-specific glycosylation of HIV Envelope glycoprotein (Env) is challenging as it contains 25–30 glycosylation sites with multiple glycan forms at each site. Here the authors present a generally applicable mass spectrometry-based
Externí odkaz:
https://doaj.org/article/b94d469c8f5c4c89a79f2c9ed20be9ab
Autor:
Mark Samson, Margaret M Jow, Catherine C L Wong, Colin Fitzpatrick, Aaron Aslanian, Israel Saucedo, Rodrigo Estrada, Takashi Ito, Sung-kyu Robin Park, John R Yates, Diana S Chu
Publikováno v:
PLoS Genetics, Vol 10, Iss 10, p e1004588 (2014)
In addition to the DNA contributed by sperm and oocytes, embryos receive parent-specific epigenetic information that can include histone variants, histone post-translational modifications (PTMs), and DNA methylation. However, a global view of how suc
Externí odkaz:
https://doaj.org/article/284585055a3746b99d192655d04239a1
In vivo characterization of protein structures or protein structural changes after perturbation is a major challenge. Therefore, experiments to characterize protein structures are typically performed in vitro and with highly purified proteins or prot
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::841d315b44a7c125bd48ff40df7b2118
https://doi.org/10.1101/2021.03.02.433670
https://doi.org/10.1101/2021.03.02.433670
Autor:
Savita Udainiya, Hokeun Kim, Anil K. Madugundu, Hui Zhao, Sang Won Lee, Mayank Saraswat, Nagarajan Kannan, Dong Gi Mun, Sung Kyu Robin Park, Santosh Renuse, Raja Sekhar Nirujogi, John R. Yates, Chan Hyun Na, Akhilesh Pandey
Publikováno v:
Analytical chemistry. 92(21)
A data-independent acquisition (DIA) approach is being increasingly adopted as a promising strategy for identification and quantitation of proteomes. As most DIA data sets are acquired with wide isolation windows, highly complex MS/MS spectra are gen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e063e234d9d3822ea6ad72521687d0d3
https://pubmed.ncbi.nlm.nih.gov/33079518
https://pubmed.ncbi.nlm.nih.gov/33079518
Autor:
Titus Jung, John R. Yates, Peter S. Thuy-Boun, Sung Kyu Robin Park, Dennis W. Wolan, Ana Y. Wang
Publikováno v:
J Proteome Res
We designed a metaproteomic analysis method (ComPIL) to accommodate the ever-increasing number of sequences against which experimental shotgun proteomics spectra could be accurately and rapidly queried. Our objective was to create these large databas
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e756fb436ba9af43ea3b8fc2af1a01b9
https://doi.org/10.1021/acs.jproteome.8b00722
https://doi.org/10.1021/acs.jproteome.8b00722
Autor:
Liwei Cao, Sung-Kyu Robin Park, Claire M. Delahunty, Dennis R. Burton, Yuanhui Ma, Jason S. McLellan, Matthias Pauthner, James C. Paulson, Jolene K. Diedrich, John R. Yates, Nianshuang Wang
Publikováno v:
Nature Protocols. 13:1196-1212
This protocol describes a semiquantitative glycoproteomics method using sequential treatment with endoglycosidases to create unique mass signatures to determine glycan occupancy and proportion of high-mannose and complex glycans at each glycosite. N-
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f7ce43f9096fd3cf6e16ef5f66202775
https://doi.org/10.1038/nprot.2018.024
https://doi.org/10.1038/nprot.2018.024
Autor:
Ji Yeong Park, Hyoung Joo Lee, Eun Sun Ji, John R. Yates, Young Mok Park, Hyun Kyoung Lee, Kyung Hoon Kwon, Kwang Hoe Kim, Gun Wook Park, Heeyoun Hwang, Jin Young Kim, Sung Kyu Robin Park, Jong Shin Yoo, Ju Yeon Lee, Young Ki Paik
Publikováno v:
Journal of Proteome Research. 15:4082-4090
In the Chromosome-Centric Human Proteome Project (C-HPP), false-positive identification by peptide spectrum matches (PSMs) after database searches is a major issue for proteogenomic studies using liquid-chromatography and mass-spectrometry-based larg
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::faf192a102b442b3ce6e59aca2007954
https://doi.org/10.1021/acs.jproteome.6b00376
https://doi.org/10.1021/acs.jproteome.6b00376
Autor:
Heeyoun Hwang, Kwang Hoe Kim, Ju Yeon Lee, Hyoung Joo Lee, Young Mok Park, Jin Young Kim, Gun Wook Park, Kyung Hoon Kwon, Hyun Kyoung Lee, Eun Sun Ji, Jong Shin Yoo, Sung Kyu Robin Park, Tao Xu, Young Ki Paik, John R. Yates
Publikováno v:
Journal of Proteome Research. 14:5028-5037
The goal of the Chromosome-Centric Human Proteome Project (C-HPP) is to fully provide proteomic information from each human chromosome, including novel proteoforms, such as novel protein-coding variants expressed from noncoding genomic regions, alter
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6ea168dc25bfa5b17d398a395e3ac0b1
https://doi.org/10.1021/acs.jproteome.5b00472
https://doi.org/10.1021/acs.jproteome.5b00472
Autor:
Heeyoun Hwang, Ju Yeon Lee, Hyoung Joo Lee, Young Mok Park, Jong Shin Yoo, Hyun Kyoung Lee, John R. Yates, Gun Wook Park, Ji Yeong Park, Jin Young Kim, Young Ki Paik, Sung Kyu Robin Park, Ji Eun Jeong, Kyung Hoon Kwon
Publikováno v:
Journal of proteome research. 16(12)
Human Proteome Project aims to map all human proteins including missing proteins as well as proteoforms with post translational modifications, alternative splicing variants (ASVs), and single amino acid variants (SAAVs). neXtProt and Ensemble databas
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d39c9625566ffbaf873e4ab55bbc36f
https://pubmed.ncbi.nlm.nih.gov/28965411
https://pubmed.ncbi.nlm.nih.gov/28965411