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Akademický článek

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote

Autor: Liu Shikai, Zhang Yu, Zhou Zunchun, Waldbieser Geoff, Sun Fanyue, Lu Jianguo, Zhang Jiaren, Jiang Yanliang, Zhang Hao, Wang Xiuli, Rajendran KV, Khoo Lester, Kucuktas Huseyin, Peatman Eric, Liu Zhanjiang

Publikováno v: BMC Genomics, Vol 13, Iss 1, p 595 (2012)

Abstract Background Upon the completion of whole genome sequencing, thorough genome annotation that associates genome sequences with biological meanings is essential. Genome annotation depends on the availability of transcript information as well as

Externí odkaz: https://doaj.org/article/b09ea293d672406ba7b4194da80aa8f2

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Akademický článek

A pilot study for channel catfish whole genome sequencing and de novo assembly

Autor: Jiang Yanliang, Lu Jianguo, Peatman Eric, Kucuktas Huseyin, Liu Shikai, Wang Shaolin, Sun Fanyue, Liu Zhanjiang

Publikováno v: BMC Genomics, Vol 12, Iss 1, p 629 (2011)

Abstract Background Recent advances in next-generation sequencing technologies have drastically increased throughput and significantly reduced sequencing costs. However, the average read lengths in next-generation sequencing technologies are short as

Externí odkaz: https://doaj.org/article/f4360b69ebba44c9af721a3d85682f51

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Akademický článek

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array

Autor: Kaltenboeck Ludmilla, Kucuktas Huseyin, Jiang Yanliang, Liu Hong, Wang Shaolin, Sun Fanyue, Lu Jianguo, Zhou Zunchun, Liu Shikai, Peatman Eric, Liu Zhanjiang

Publikováno v: BMC Genomics, Vol 12, Iss 1, p 53 (2011)

Abstract Background Single nucleotide polymorphisms (SNPs) have become the marker of choice for genome-wide association studies. In order to provide the best genome coverage for the analysis of performance and production traits, a large number of rel

Externí odkaz: https://doaj.org/article/4bb4f09136f84af59dd8a44b73a9d6e4

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