Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Sukanya Punthambaker"'
Autor:
Howon Lee, Daniel J. Wiegand, Kettner Griswold, Sukanya Punthambaker, Honggu Chun, Richie E. Kohman, George M. Church
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-9 (2020)
Writing data in DNA is still a bottleneck due to the reliance on chemical synthesis methods. Here the authors report multiplexed enzymatic DNA synthesis using maskless photolithography.
Externí odkaz:
https://doaj.org/article/f0694cb516a3421f8daca6541c619c5f
Autor:
Sukanya Punthambaker
Publikováno v:
Nature nanotechnology. 17(10)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cb5b48ed01686f41d526d23a788c3b06
https://pubmed.ncbi.nlm.nih.gov/35851382
https://pubmed.ncbi.nlm.nih.gov/35851382
Autor:
Renee Wurth, Tara MacDonald, Jonathan Scheiman, Clary B. Clish, Jacob M. Luber, Julian Avila-Pacheco, Loc-Duyen D. Pham, Theodore A. Chavkin, Angela Tung, Sarah J. Lessard, George M. Church, Zhen Yang, Aleksandar Kostic, Marsha C. Wibowo, Mohammad W. Hattab, Sukanya Punthambaker, Braden T. Tierney
Publikováno v:
Nature medicine
The human gut microbiome is linked to many states of human health and disease1. The metabolic repertoire of the gut microbiome is vast, but the health implications of these bacterial pathways are poorly understood. In this study, we identify a link b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ca7dbdf12f7ffd7e0aa653b770d8b381
https://doi.org/10.1038/s41591-019-0485-4
https://doi.org/10.1038/s41591-019-0485-4
Autor:
Kunal Jindal, Je-Hyuk Lee, Daniel Goodwin, Thomas C. Ferrante, Conor K. Camplisson, George M. Church, Shahar Alon, Eswar Prasad Ramachandran Iyer, Lauren Mifflin, Anne Cheng, Bruce A. Yankner, Richie E. Kohman, Edward S. Boyden, Songlei Liu, King Hwa Ling, Valerie Willocq, Sukanya Punthambaker, Katharina Meyer, John Aach, Jenny M. Tam, Asmamaw T Wassie, Fei Chen, Daniel Fürth, Anubhav Sinha, Andrew C. Pawlowski
Publikováno v:
Nucleic Acids Research
We present barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel insitu analyses (BOLORAMIS), a reverse transcription-free method for spatially-resolved, targeted, in situ RNA identification of single or multiple targets. BO
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b9b3378a2ccf575769ac6816ac6a070e
https://pubmed.ncbi.nlm.nih.gov/33693773
https://pubmed.ncbi.nlm.nih.gov/33693773
Autor:
Daniel J. Wiegand, Honggu Chun, Sukanya Punthambaker, George M. Church, Howon Lee, Kettner Griswold, Richie E. Kohman
Publikováno v:
Nature Communications
Nature Communications, Vol 11, Iss 1, Pp 1-9 (2020)
Nature Communications, Vol 11, Iss 1, Pp 1-9 (2020)
New storage technologies are needed to keep up with the global demands of data generation. DNA is an ideal storage medium due to its stability, information density and ease-of-readout with advanced sequencing techniques. However, progress in writing
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::65e39c88d727e91e5a890c40f6134ff1
https://doi.org/10.1038/s41467-020-18681-5
https://doi.org/10.1038/s41467-020-18681-5
Techniques that can both spatially map out molecular features and discriminate many targets would be highly valued for their utility in studying fundamental nanoscale processes. In spite of decades of development, no current technique can achieve bot
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::23f0c4a7bbf5bbae2f03327da0339249
https://doi.org/10.1101/2020.08.27.271072
https://doi.org/10.1101/2020.08.27.271072
Autor:
Eswar Prasad Ramachandran Iyer, Adam H. Marblestone, Chih-Chieh Yu, Aviv Regev, Nikhil Wagle, Nicole Cullen, Atsushi Kajita, Nikita Pak, Johanna Klughammer, Sukanya Punthambaker, Andrew C. Payne, Anubhav Sinha, Bruce E. Johnson, Ho-Jun Suk, Fei Chen, Andrew G Xue, Yi Cui, Orit Rozenblatt-Rosen, Ru Wang, Jeremy A. Miller, Daniel L Abravanel, Ana Lako, Karla Helvie, Yosuke Bando, Michal Slyper, Paul Reginato, Paul W. Tillberg, Chun-Chen Yao, Ed S. Lein, Shahar Alon, Judit Jané-Valbuena, Asmamaw T Wassie, Daniel Goodwin, Evan R. Daugharthy, Richie E. Kohman, Edward S. Boyden, George M. Church, Songlei Liu, Karl Marrett, Robert Prior, Julia Waldman, Scott J. Rodig
Methods for highly multiplexed RNA imaging are limited in spatial resolution, and thus in their ability to localize transcripts to nanoscale and subcellular compartments. We adapt expansion microscopy, which physically expands biological specimens, f
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::dd7f985d5dd30287e6f6e3f0aa6afed8
https://doi.org/10.1101/2020.05.13.094268
https://doi.org/10.1101/2020.05.13.094268
Autor:
Sukanya Punthambaker, Stefan Roever, James Pollard, Timothy Craig, Adam Qwan, Preethi Sarvabhowman, Shaw Sun, Andrew Trans, Jeff Nivala, Sara Kelley, Eileen Thai, Mirko Palla, P. Benjamin Stranges, Daniel J. Wiegand, Ilya Lederman, Frederic Vigneault, Aruna Ayer, Colin Mcgaw, Helen Franklin, Charles Schwab, George M. Church, Evan Amato, Dhruti Dalal, Cleoma Arnold, Carl W. Fuller, Dmitriy Gremyachinskiy, Meng Taing
DNA polymerases have revolutionized the biotechnology field due to their ability to precisely replicate stored genetic information. Screening variants of these enzymes for unique properties gives the opportunity to identify polymerases with novel fea
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7aadfe057b29ffe39fde4476cc3c707
https://doi.org/10.1101/2020.03.15.993071
https://doi.org/10.1101/2020.03.15.993071
Autor:
Xiaoming Sun, Andyna Vernet, Ronglih Liao, Joseph V. Bonventre, George M. Church, Noah Davidsohn, Matthew J. Pezone, Daniel Oliver, Amanda R. Graveline, Shimyn Slomovic, Sukanya Punthambaker
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America. 116(47)
Comorbidity is common as age increases, and currently prescribed treatments often ignore the interconnectedness of the involved age-related diseases. The presence of any one such disease usually increases the risk of having others, and new approaches
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0c7752e4936a4b0882e8b8856478a310
https://pubmed.ncbi.nlm.nih.gov/31871168
https://pubmed.ncbi.nlm.nih.gov/31871168
Autor:
Richie E. Kohman, Edward S. Boyden, Songlei Liu, Daniel Goodwin, Thomas C. Ferrante, Conor K. Camplisson, George M. Church, Sukanya Punthambaker, Asmamaw T Wassie, Anubhav Sinha, Alex Skrynnyk, Kunal Jindal, Michael Farrell, Nicholas Conway, Fei Chen, Denitsa Milanova, Eswar Prasad Ramachandran Iyer, Bruce A. Yankner, Stewart Rudnicki, Paul Reginato, Shahar Alon, John Aach, Liviu Aron, Jernej Murn
We present Barcoded Oligonucleotides Ligated On RNA Amplified for Multiplexed and parallel In-Situ analysis (BOLORAMIS), a reverse-transcription (RT)-free method for spatially-resolved, targeted, in-situ RNA identification of single or multiple targe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b1641ca214322f7d235a7bde9dfa974f
https://doi.org/10.1101/281121
https://doi.org/10.1101/281121