VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center

Autor: Jamie Long, Sheena Shah Tomko, Susanne Warrenfeltz, Kristopher Lamoureux, Mary Ann McDowell, Brett Fox, Ulrike Böhme, Mark J Hickman, Steve Fisher, David Starns, George K. Christophides, Ana Barreto, Ann Sizemore Blevins, David S. Roos, Daniel Lawson, Lin Xu, Jie Zheng, John Judkins, Kristina Davis, Ryan Doherty, Jeremy D. DeBarry, Jaroslaw Nabrzyski, Lahcen I. Campbell, Samuel S. C. Rund, Evelina Y. Basenko, Beatrice Amos, Dave Falke, Mikkel B. Christensen, Stephanie Wever Schulman, Robert Wieck, Michael J. Dunn, Gareth Maslen, Mark X. Caddick, Haiming Wang, Robert Belnap, Wei Li, Christiane Hertz-Fowler, Achchuthan Shanmugasundram, Kathryn Crouch, Sarah A. Kelly, Wojciech Bażant, Sufen Hu, Bindu Gajria, Christian J. Stoeckert, Elizabeth Harper, Jay C. Humphrey, Jessica C. Kissinger, Paul A Wilkinson, Yikun Duan, Brian P. Brunk, John Brestelli, Matthieu Barba, Robert M. MacCallum, Kallie Lies, Omar S. Harb, Vasily Sitnik, Paul Flicek, Andrew M. Jones, Disha Lodha, Gloria I. Giraldo-Calderón, John Iodice, Danielle Callan, Drew Spruill, Cristina Aurrecoechea, Connor Howington, Dae Kun Kwon

Publikováno v: NUCLEIC ACIDS RESEARCH
Nucleic Acids Research
Amos, B, Aurrecoechea, C, Barba, M, Barreto, A, Basenko, E Y, Bażant, W, Belnap, R, Blevins, A S, Böhme, U, Brestelli, J, Brunk, B P, Caddick, M, Callan, D, Campbell, L, Christensen, M B, Christophides, G K, Crouch, K, Davis, K, Debarry, J, Doherty, R, Duan, Y, Dunn, M, Falke, D, Fisher, S, Flicek, P, Fox, B, Gajria, B, Giraldo-Calderón, G I, Harb, O S, Harper, E, Hertz-Fowler, C, Hickman, M J, Howington, C, Hu, S, Humphrey, J, Iodice, J, Jones, A, Judkins, J, Kelly, S A, Kissinger, J C, Kwon, D K, Lamoureux, K, Lawson, D, Li, W, Lies, K, Lodha, D, Long, J, MacCallum, R M, Maslen, G, McDowell, M A, Nabrzyski, J, Roos, D S, Rund, S S C, Schulman, S W, Shanmugasundram, A, Sitnik, V, Spruill, D, Starns, D, Stoeckert, C J, Tomko, S S, Wang, H, Warrenfeltz, S, Wieck, R, Wilkinson, P A, Xu, L & Zheng, J 2022, ' VEuPathDB : The eukaryotic pathogen, vector and host bioinformatics resource center ', Nucleic Acids Research, vol. 50, no. D1 . https://doi.org/10.1093/nar/gkab929

The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) represents the 2019 merger of VectorBase with the EuPathDB projects. As a Bioinformatics Resource Center funded by the National Institutes of Health, wit

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3e18d51670b3121a959cb0e4c2478f0b
http://livrepository.liverpool.ac.uk/3142948/1/gkab929.pdf

Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

Autor: Sufen Hu, Amber K. Weiner, Tina Graves, Shiela Paul, Paul M. Lieberman, Catrina Fronick, Ravi Gupta, Zhong Deng, Nicholas Stong, Laura Courtney, Evan E. Eichler, Richard K. Wilson, Harold Riethman, Ramana V. Davuluri

Publikováno v: Genome Research. 24:1039-1050

Mapping genome-wide data to human subtelomeres has been problematic due to the incomplete assembly and challenges of low-copy repetitive DNA elements. Here, we provide updated human subtelomere sequence assemblies that were extended by filling telome

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cd23bfcec2fe2cf03bec8853559fe7aa
https://doi.org/10.1101/gr.166983.113

Fine-mapping subtelomeric deletions and duplications by comparative genomic hybridization in 42 individuals

Autor: Laura K. Conlin, Nancy B. Spinner, Ian D. Krantz, Sufen Hu, Dinah Yaeger, Cheryl DeScipio, Simei Shan, Anthony E. Ambrosini, Harold Riethman, Maninder Kaur

Publikováno v: American journal of medical genetics. Part A. (6)

Human subtelomere regions contain numerous gene-rich segments and are susceptible to germline rearrangements. The availability of diagnostic test kits to detect subtelomeric rearrangements has resulted in the diagnosis of numerous abnormalities with

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9d9c1702297f8bbb10b8bc10a56bf831
https://pubmed.ncbi.nlm.nih.gov/18257100

Comparative sequence analyses reveal sites of ancestral chromosomal fusions in the Indian muntjac genome

Autor: Vicky Tsipouri, Mary G Schueler, Sufen Hu, Nisc Comparative Sequencing Program, Amalia Dutra, Evgenia Pak, Harold Riethman, Eric D Green

Publikováno v: Genome Biology

Comparative mapping and sequencing was used to characterize the sites of ancestral chromosomal fusions in the Indian muntjac genome.
Background Indian muntjac (Muntiacus muntjak vaginalis) has an extreme mammalian karyotype, with only six and se

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a7a4b8f6c6f4fbb5b3b34c9bc4cce5b4
https://doi.org/10.1186/gb-2008-9-10-r155

EuPathDB: The Eukaryotic Pathogen database.

Autor: Aurrecoechea, Cristina, Barreto, Ana, Brestelli, John, Brunk, Brian P., Shon Cade, Doherty, Ryan, Fischer, Steve, Gajria, Bindu, Xin Gao, Gingle, Alan, Grant, Greg, Harb, Omar S., Heiges, Mark, Sufen Hu, Iodice, John, Kissinger, Jessica C., Kraemer, Eileen T., Wei Li, Pinney, Deborah F., Pitts, Brian

Publikováno v: Nucleic Acids Research; 2013 Database Issue Suppliment, Vol. 41, pD684-D691, 8p