Zobrazeno 1 - 10
of 30
pro vyhledávání: '"Sucharita Dey"'
Publikováno v:
Frontiers in Molecular Biosciences, Vol 9 (2022)
Protein-DNA interactions play a crucial role in gene expression and regulation. Identifying the DNA binding surface of proteins has long been a challenge–in comparison to protein-protein interactions, limited progress has been made in the developme
Externí odkaz:
https://doaj.org/article/0756ed9181834f42babda582356140c7
Publikováno v:
Frontiers in Molecular Biosciences, Vol 8 (2022)
The identification of physiologically relevant quaternary structures (QSs) in crystal lattices is challenging. To predict the physiological relevance of a particular QS, QSalign searches for homologous structures in which subunits interact in the sam
Externí odkaz:
https://doaj.org/article/a08bf63976ac4cb09ab50117923f9add
Autor:
Sucharita Dey, Pradip Kr. Sukul
Publikováno v:
ACS Omega, Vol 4, Iss 14, Pp 16191-16200 (2019)
Externí odkaz:
https://doaj.org/article/9d3faac73f7b46d6bf03de22578664d6
Publikováno v:
PLoS ONE, Vol 7, Iss 5, p e37468 (2012)
Virstatin is a small molecule that inhibits Vibrio cholerae virulence regulation, the causative agent for cholera. Here we report the interaction of virstatin with human serum albumin (HSA) using various biophysical methods. The drug binding was moni
Externí odkaz:
https://doaj.org/article/2ecea4e6a70a444dbc227740afead8c1
Publikováno v:
PLoS ONE, Vol 4, Iss 5, p e5566 (2009)
The number and importance of intrinsically disordered proteins (IUP), known to be involved in various human disorders, are growing rapidly. To test for the generalized implications of intrinsic disorders in proteins involved in Neurodegenerative dise
Externí odkaz:
https://doaj.org/article/40e6739a6e3846fbb167d20b81845ef4
Autor:
Hugo Schweke, Qifang Xu, Gerardo Tauriello, Lorenzo Pantolini, Torsten Schwede, Frédéric Cazals, Alix Lhéritier, Juan Fernandez-Recio, Luis Ángel Rodríguez-Lumbreras, Ora Schueler-Furman, Julia K. Varga, Brian Jiménez-García, Manon F. Réau, Alexandre Bonvin, Castrense Savojardo, Pier-Luigi Martelli, Rita Casadio, Jérôme Tubiana, Haim Wolfson, Romina Oliva, Didier Barradas-Bautista, Tiziana Ricciardelli, Luigi Cavallo, Česlovas Venclovas, Kliment Olechnovič, Raphael Guerois, Jessica Andreani, Juliette Martin, Xiao Wang, Daisuke Kihara, Anthony Marchand, Bruno Correia, Xiaoqin Zou, Sucharita Dey, Roland Dunbrack, Emmanuel Levy, Shoshana Wodak
Reliably scoring and ranking candidate models of protein complexes and assigning their oligomeric state from the structure of the crystal lattice represent outstanding challenges. A community-wide effort was launched to tackle these challenges. The l
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::adaf2d977a6fae24f92d44626aa47f9a
https://doi.org/10.22541/au.167569565.51141128/v1
https://doi.org/10.22541/au.167569565.51141128/v1
Autor:
David Bednar, Sucharita Dey, Emmanuel D. Levy, Natarajan Kannan, Bissan Al-Lazikani, Damiano Piovesan, Luis A Rodriguez, Sameer Velankar, Mihaly Varadi, Jan Stourac, Jaime Prilusky, Manjeet Kumar, Radoslav Krivak, Michael J.E. Sternberg, Juan Fernandez Recio, Daniel Zaidman, David R. Armstrong, Nathan J Rollins, Gulzar Singh, Jiri Damborsky, Dandan Xue, Stephen Anyango, Vivek Modi, Antonio Rosato, Christine A. Orengo, Valeria Putignano, Radka Svobodová, Alessia David, Debora S. Marks, Roland L. Dunbrack, Jose Ramon Macias, David Jakubec, Mark N. Wass, Luis Serrano, Silvio C. E. Tosatto, John M. Berrisford, Ahsan Tanweer, Sreenath Nair, Geoffrey J. Barton, Wim F. Vranken, Lukáš Pravda, Karel Berka, Stuart A McGowan, Janet M. Thornton, Nir London, Madhusudhan M Srivatsan, Lennart Martens, Atilio O Rausch, Toby J. Gibson, Pawel Rubach, Joanna I. Sulkowska, Petr Škoda, Gerardo Pepe, Nathalie Reuter, Natalia Tichshenko, Mandar Deshpande, Franca Fraternali, David Hoksza, Tom L. Blundell, R. Gonzalo Parra, Preeti Choudhary, José María Carazo, Claudia Andreini, Jake E McGreig, Leandro G Radusky, Thomas A. Hopf, Pathmanaban Ramasamy, Carlos Oscar S. Sorzano, Manuela Helmer-Citterich, Kelly P Brock, Nurul Nadzirin
Publikováno v:
Nucleic acids research
Nucleic Acids Research
Nucleic Acids Research (NAR)
D534-D542
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
D542
D534
Nucleic Acids Research
Nucleic Acids Research (NAR)
D534-D542
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
D542
D534
The Protein Data Bank in Europe – Knowledge Base (PDBe-KB, https://pdbe-kb.org) is an open collaboration between world-leading specialist data resources contributing functional and biophysical annotations derived from or relevant to the Protein Dat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::050cb89e62952b78f542717c68240da1
https://kar.kent.ac.uk/95049/1/gkab988.pdf
https://kar.kent.ac.uk/95049/1/gkab988.pdf
Autor:
Prince Kumar, Punarbasu Chaudhuri, Shouvik Mahanty, Ankita Saha, Pradip Kr. Sukul, Sucharita Dey, Chirantan Kar, Rajdeep Saha
Publikováno v:
Materials Advances. 1:1817-1828
Instability in water, the complexity of separation of the toxic substances produced and reusability issues for the reported materials used for the decontamination of lead from water are the hindrances that have caught the attention of the modern scie
Autor:
Harry Jubb, Aleksandras Gutmanas, Radka Svobodová, Stephen Anyango, Sreenath Nair, Manjeet Kumar, Jonathan D. Tyzack, Leandro G Radusky, Toby J. Gibson, Liang-Chin Huang, Luis Serrano, Eloy Villasclaras Fernandez, Sameer Velankar, Petr Škoda, Michael J.E. Sternberg, Mark N. Wass, Fábio Madeira, Christine A. Orengo, Rishabh Jain, Stuart A. MacGowan, Patrizio Di Micco, Sayoni Das, Emmanuel D. Levy, Natarajan Kannan, John M. Berrisford, Tom L. Blundell, Janet M. Thornton, Radoslav Krivak, Christos C. Kannas, Lukáš Pravda, Bissan Al-Lazikani, Jose M. Dana, Abhik Mukhopadhyay, David R. Armstrong, Saqib Mir, Mihaly Varadi, Franca Fraternali, Karel Berka, Mallur S. Madhusudhan, Jake E McGreig, Mandar Deshpande, Neera Borkakoti, Luca Parca, António J. M. Ribeiro, Ian Sillitoe, Henry J Martell, Manuela Helmer-Citterich, Sucharita Dey, David Hoksza, Gulzar Singh, Jaroslav Koča, Typhaine Paysan-Lafosse, Geoffrey J. Barton, Alfonso Valencia, Wim F. Vranken
Publikováno v:
Nucleic Acids Research
D353
D344
D353
D344
The Protein Data Bank in Europe-Knowledge Base (PDBe-KB, https://pdbe-kb.org) is a community-driven, collaborative resource for literature-derived, manually curated and computationally predicted structural and functional annotations of macromolecular
Autor:
Sucharita Dey, Emmanuel D. Levy
Publikováno v:
Structure
Structure(London, England:1993)
Structure(London, England:1993)
Summary An accurate understanding of biomolecular mechanisms and diseases requires information on protein quaternary structure (QS). A critical challenge in inferring QS information from crystallography data is distinguishing biological interfaces fr