Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Stuart Ozer"'
Publikováno v:
PLoS ONE, Vol 7, Iss 6, p e39383 (2012)
Covariation analysis is used to identify those positions with similar patterns of sequence variation in an alignment of RNA sequences. These constraints on the evolution of two positions are usually associated with a base pair in a helix. While mutua
Externí odkaz:
https://doaj.org/article/bc7fcc81ed5f4d0bb02497d79dfa1c3b
Publikováno v:
Journal of Molecular Biology. 391:769-783
The accurate prediction of the secondary and tertiary structure of an RNA with different folding algorithms are dependent on several factors, including the energy functions. However, an RNA higher-order structure cannot be accurately predicted from i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2b1b60a87f3f100e5d20e982c1724e86
https://doi.org/10.1016/j.jmb.2009.06.036
https://doi.org/10.1016/j.jmb.2009.06.036
Autor:
Stuart Ozer, David P. Gardner, Robin R. Gutell, Daniel P. Miranker, Jamie J. Cannone, Weijiaxu
Publikováno v:
BIBM
The rapid determination of nucleic acid sequences is increasing the number of sequences that are available. Inherent in a template or seed alignment is the culmination of structural and functional constraints that are selecting those mutations that a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e400d05bba4b1c22752a9cac41d18eaf
https://pubmed.ncbi.nlm.nih.gov/24772376
https://pubmed.ncbi.nlm.nih.gov/24772376
Autor:
Daniel P. Miranker, Lei Shang, Stuart Ozer, Robin R. Gutell, Jamie J. Cannone, Weijia Xu, David P. Gardner
Publikováno v:
BMC Systems Biology
Background The analysis of RNA sequences, once a small niche field for a small collection of scientists whose primary emphasis was the structure and function of a few RNA molecules, has grown most significantly with the realizations that 1) RNA is im
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c2bcc3bfcea9b34dbcda572a7ac4412
https://doi.org/10.1186/1752-0509-7-s4-s13
https://doi.org/10.1186/1752-0509-7-s4-s13
Publikováno v:
PLoS ONE
PLoS ONE, Vol 7, Iss 6, p e39383 (2012)
PLoS ONE, Vol 7, Iss 6, p e39383 (2012)
Covariation analysis is used to identify those positions with similar patterns of sequence variation in an alignment of RNA sequences. These constraints on the evolution of two positions are usually associated with a base pair in a helix. While mutua
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9c35d0e7178fc3f19c1428413c85f0a5
https://pubmed.ncbi.nlm.nih.gov/22724009
https://pubmed.ncbi.nlm.nih.gov/22724009
Publikováno v:
eScience
Beyond its direct involvement in protein synthesis with mRNA, tRNA, and rRNA, RNA is now being appreciated for its significance in the overall metabolism and regulation of the cell. Comparative analysis has been very effective in the identification a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ee09bdaa97cbf88c7fe925597abc5c5a
https://doi.org/10.1109/escience.2011.11
https://doi.org/10.1109/escience.2011.11
Publikováno v:
Journal of molecular biology. 413(2)
RNA is directly associated with a growing number of functions within the cell. The accurate prediction of different RNAs higher-order structure from their nucleic acid sequences will provide insight into their functions and molecular mechanics. We ha
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fffb13c8d2fa24df53c7dc3f2095f5ec
https://pubmed.ncbi.nlm.nih.gov/21889515
https://pubmed.ncbi.nlm.nih.gov/21889515
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783642022784
SSDBM
SSDBM
With an increasingly large amount of sequences properly aligned, comparative sequence analysis can accurately identify not only common structures formed by standard base pairing but also new types of structural elements and constraints. However, trad
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5fa2d473d4173b604e19a5c9f0683a30
https://europepmc.org/articles/PMC2874981/
https://europepmc.org/articles/PMC2874981/
Autor:
Alexander S. Szalay, Stuart Ozer, Josh Cogan, Jim Gray, Katalin Szlavecz, Andreas Terzis, Răzvan Musăloiu-E., Randal Burns
Publikováno v:
SenSys
Science is increasingly driven by data collected automatically from arrays of inexpensive sensors. The collected data volumes require a different approach from the scientists' current Excel spreadsheet storage and analysis model. Spreadsheets work we
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::774feb0aa66771ef17d4bdae341095d4
https://doi.org/10.1145/1182807.1182844
https://doi.org/10.1145/1182807.1182844
Autor:
Stuart Ozer, J. Cogan, Răzvan Musăloiu-E., Alexander S. Szalay, Jayant Gupchup, Katalin Szlavecz, Chieh-Jan Mike Liang, Jim Gray, Andreas Terzis, Randal Burns
Publikováno v:
International Journal of Sensor Networks. 7:53
Wireless sensor networks can revolutionise soil ecology by providing measurements at temporal and spatial granularities previously impossible. This paper presents our first steps towards fulfilling that goal by developing and deploying two experiment
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c3679a9ee89c1232d65d00626a70d857
https://doi.org/10.1504/ijsnet.2010.031850
https://doi.org/10.1504/ijsnet.2010.031850