Zobrazeno 1 - 10
of 70
pro vyhledávání: '"Strain tracking"'
StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities
Autor:
Lucas R. van Dijk, Bruce J. Walker, Timothy J. Straub, Colin J. Worby, Alexandra Grote, Henry L. Schreiber, Christine Anyansi, Amy J. Pickering, Scott J. Hultgren, Abigail L. Manson, Thomas Abeel, Ashlee M. Earl
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-27 (2022)
Abstract Human-associated microbial communities comprise not only complex mixtures of bacterial species, but also mixtures of conspecific strains, the implications of which are mostly unknown since strain level dynamics are underexplored due to the d
Externí odkaz:
https://doaj.org/article/ebea40720d8445e09bfcaeec17a670df
Autor:
Yi-Syong Chen, Yueh-Hua Tu, Bo-Han Chen, Yen-Yi Liu, Yu-Ping Hong, Ru-Hsiou Teng, You-Wun Wang, Chien-Shun Chiou
Publikováno v:
Journal of Microbiology, Immunology and Infection, Vol 55, Iss 1, Pp 102-106 (2022)
Background: Cholera, a rapidly dehydrating diarrheal disease caused by toxigenic Vibrio cholerae, is a leading cause of morbidity and mortality in some regions of the world. Core genome multilocus sequence typing (cgMLST) is a promising approach in g
Externí odkaz:
https://doaj.org/article/f6594d08542948d9b130c2bf9d1fc91f
Autor:
Hyunmin Koo, Casey D. Morrow
Publikováno v:
BMC Microbiology, Vol 21, Iss 1, Pp 1-11 (2021)
Abstract Background To understand inter-individual variability of fecal microbe transplantation (FMT) to enhance anti-PD-1 immunotherapy (IT) for melanoma, we analyzed the data sets from two recent publications with a microbial strain-tracking tool t
Externí odkaz:
https://doaj.org/article/4b97f9e5510d46e481152800e2d82d94
Autor:
Patrick T. West, Samantha L. Peters, Matthew R. Olm, Feiqiao B. Yu, Haley Gause, Yue Clare Lou, Brian A. Firek, Robyn Baker, Alexander D. Johnson, Michael J. Morowitz, Robert L. Hettich, Jillian F. Banfield
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-17 (2021)
Abstract Background Candida parapsilosis is a common cause of invasive candidiasis, especially in newborn infants, and infections have been increasing over the past two decades. C. parapsilosis has been primarily studied in pure culture, leaving gaps
Externí odkaz:
https://doaj.org/article/613fb6973098467990e4a5ad5b678134
Publikováno v:
Frontiers in Materials, Vol 8 (2021)
Fibre strain sensors commonly use three major modalities to transduce strain—piezoresistance, capacitance, and inductance. The electrical signal in response to strain differs between these sensing technologies, having varying sensitivity, maximum m
Externí odkaz:
https://doaj.org/article/09aa2312616941d3a34fce66ad14a2f7
Autor:
Daniel Podlesny, W. Florian Fricke
Publikováno v:
International Journal of Medical Microbiology, Vol 311, Iss 3, Pp 151483- (2021)
As many inflammatory and metabolic disorders have been associated with structural deficits of the human gut microbiota, the principles and mechanisms that govern its initialization and development are of considerable scientific interest and clinical
Externí odkaz:
https://doaj.org/article/a415177e169a4d97881459d61cd0d399
Autor:
Robert Thänert, Anna Thänert, Jocelyn Ou, Adam Bajinting, Carey-Ann D. Burnham, Holly J. Engelstad, Maria E. Tecos, I. Malick Ndao, Carla Hall-Moore, Colleen Rouggly-Nickless, Mike A. Carl, Deborah C. Rubin, Nicholas O. Davidson, Phillip I. Tarr, Barbara B. Warner, Gautam Dantas, Brad W. Warner
Publikováno v:
Gut Microbes, Vol 13, Iss 1 (2021)
Surgical removal of the intestine, lifesaving in catastrophic gastrointestinal disorders of infancy, can result in a form of intestinal failure known as short bowel syndrome (SBS). Bloodstream infections (BSIs) are a major challenge in pediatric SBS
Externí odkaz:
https://doaj.org/article/34e2a30a876a42fbb17b0150d61db8e2
Autor:
Hanne Jouhten, Aki Ronkainen, Juhani Aakko, Seppo Salminen, Eero Mattila, Perttu Arkkila, Reetta Satokari
Publikováno v:
Frontiers in Microbiology, Vol 11 (2020)
Fecal microbiota transplantation (FMT) is an effective treatment for recurrent Clostridioides difficile infection (rCDI) and it’s also considered for treating other indications. Metagenomic studies have indicated that commensal donor bacteria may c
Externí odkaz:
https://doaj.org/article/ce8b5792649d4edfa05177401b7104c8
Autor:
Hyunmin Koo, Braden C. McFarland, Joseph A. Hakim, David K. Crossman, Michael R. Crowley, J. Martin Rodriguez, Etty N. Benveniste, Casey D. Morrow
Publikováno v:
Royal Society Open Science, Vol 7, Iss 4 (2020)
To understand the origins of the infant gut microbial community, we have used a published metagenomic dataset of the faecal microbiome of mothers and their related infants at early (4, 7 and 21 days) and late times (6–15 months) following birth. Us
Externí odkaz:
https://doaj.org/article/fb429ab9a2c949469dbee4efa266058a
Autor:
Joaquin I. Rilling, Fumito Maruyama, Michael J. Sadowsky, Jacquelinne J. Acuña, Milko A. Jorquera
Publikováno v:
Microorganisms, Vol 9, Iss 7, p 1351 (2021)
Azospirillum-based plant and soil inoculants are widely used in agriculture. The inoculated Azospirillum strains are commonly tracked by both culture-dependent and culture-independent methods, which are time-consuming or expensive. In this context, c
Externí odkaz:
https://doaj.org/article/386676efb42e40c29b4c874f09dce89c