The phased Solanum okadae genome and Petota pangenome analysis of 23 other potato wild relatives and hybrids.

Autor: Achakkagari SR; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada., Bozan I; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada., Camargo-Tavares JC; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada., McCoy HJ; Department of Chemistry, University of New Brunswick, Fredericton, NB, Canada., Portal L; International Potato Center (CIP), Lima, Peru., Soto J; International Potato Center (CIP), Lima, Peru., Bizimungu B; Agriculture and Agri-Food Canada Fredericton Research and Development Centre, Fredericton, NB, Canada., Anglin NL; International Potato Center (CIP), Lima, Peru.; USDA ARS Small Grains and Potato Germplasm Research, Aberdeen, ID, USA., Manrique-Carpintero N; International Potato Center (CIP), Lima, Peru.; Alliance of Bioversity International and International Center for Tropical Agriculture (CIAT), Cali, Colombia., Lindqvist-Kreuze H; International Potato Center (CIP), Lima, Peru., Tai HH; Agriculture and Agri-Food Canada Fredericton Research and Development Centre, Fredericton, NB, Canada., Strömvik MV; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada. martina.stromvik@mcgill.ca.

Publikováno v: Scientific data [Sci Data] 2024 May 04; Vol. 11 (1), pp. 454. Date of Electronic Publication: 2024 May 04.

Genome sequencing of adapted diploid potato clones.

Autor: Achakkagari SR; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada., Kyriakidou M; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada., Gardner KM; Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, Canada., De Koeyer D; Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, Canada., De Jong H; Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, Canada., Strömvik MV; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada., Tai HH; Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, NB, Canada.

Publikováno v: Frontiers in plant science [Front Plant Sci] 2022 Aug 08; Vol. 13, pp. 954933. Date of Electronic Publication: 2022 Aug 08 (Print Publication: 2022).

Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity.

Autor: Hoopes G; Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA., Meng X; Department of Horticultural Science, University of Minnesota, St. Paul, MN 55108, USA., Hamilton JP; Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA., Achakkagari SR; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC H9X 3V9, Canada., de Alves Freitas Guesdes F; Plant Breeding, Wageningen University & Research, Plant Breeding, 6708 PB Wageningen, the Netherlands., Bolger ME; IBG-4 Bioinformatics, Forschungszentrum Jülich, Wilhelm Johnen Str, 52428 Jülich, Germany., Coombs JJ; Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA., Esselink D; Plant Breeding, Wageningen University & Research, Plant Breeding, 6708 PB Wageningen, the Netherlands., Kaiser NR; Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA; Bayer Crop Science, Woodland, CA 95695, USA., Kodde L; Plant Breeding, Wageningen University & Research, Plant Breeding, 6708 PB Wageningen, the Netherlands., Kyriakidou M; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC H9X 3V9, Canada., Lavrijssen B; Plant Breeding, Wageningen University & Research, Plant Breeding, 6708 PB Wageningen, the Netherlands., van Lieshout N; Plant Breeding, Wageningen University & Research, Plant Breeding, 6708 PB Wageningen, the Netherlands., Shereda R; Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA., Tuttle HK; Department of Horticultural Science, University of Minnesota, St. Paul, MN 55108, USA., Vaillancourt B; Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA., Wood JC; Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA., de Boer JM; Averis Seeds B.V., 9640 AA Veendam, the Netherlands., Bornowski N; Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA., Bourke P; Plant Breeding, Wageningen University & Research, Plant Breeding, 6708 PB Wageningen, the Netherlands., Douches D; Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA., van Eck HJ; Plant Breeding, Wageningen University & Research, Plant Breeding, 6708 PB Wageningen, the Netherlands., Ellis D; International Potato Center, 1895 Avenida La Molina, Lima, Peru., Feldman MJ; USDA-ARS, Prosser, WA 99350, USA., Gardner KM; Agriculture and Agri-Food Canada Fredericton Research and Development Centre, Fredericton, NB E3B 4Z7, Canada., Hopman JCP; Averis Seeds B.V., 9640 AA Veendam, the Netherlands., Jiang J; Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA; Department of Horticulture, Michigan State University, East Lansing, MI 48824, USA., De Jong WS; School of Integrative Plant Science, Cornell University, Ithaca, NY 14853-1901, USA., Kuhl JC; Department of Plant Sciences, University of Idaho, Moscow, ID 83844, USA., Novy RG; USDA-ARS, Small Grains and Potato Germplasm Research, Aberdeen, ID 83210, USA., Oome S; HZPC Research B.V., Edisonweg 5, 8501 XG Joure, the Netherlands., Sathuvalli V; Department of Crop and Soil Science, Oregon State University, Hermiston, OR 97838, USA., Tan EH; School of Biology and Ecology, University of Maine, 5735 Hitchner Hall Orono, ME 04469, USA., Ursum RA; HZPC Research B.V., Edisonweg 5, 8501 XG Joure, the Netherlands., Vales MI; Department of Horticultural Sciences, Texas A&M University, College Station, TX 77843-2133, USA., Vining K; Department of Horticulture, Oregon State University, Corvallis, OR 97331, USA., Visser RGF; Plant Breeding, Wageningen University & Research, Plant Breeding, 6708 PB Wageningen, the Netherlands., Vossen J; Plant Breeding, Wageningen University & Research, Plant Breeding, 6708 PB Wageningen, the Netherlands., Yencho GC; Department of Horticultural Science, North Carolina State University, Raleigh, NC 27695-7609, USA., Anglin NL; International Potato Center, 1895 Avenida La Molina, Lima, Peru; USDA-ARS, Small Grains and Potato Germplasm Research, Aberdeen, ID 83210, USA., Bachem CWB; Plant Breeding, Wageningen University & Research, Plant Breeding, 6708 PB Wageningen, the Netherlands., Endelman JB; Department of Horticulture, University of Wisconsin-Madison, Madison, WI 53706, USA., Shannon LM; Department of Horticultural Science, University of Minnesota, St. Paul, MN 55108, USA., Strömvik MV; Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC H9X 3V9, Canada., Tai HH; Agriculture and Agri-Food Canada Fredericton Research and Development Centre, Fredericton, NB E3B 4Z7, Canada., Usadel B; IBG-4 Bioinformatics, Forschungszentrum Jülich, Wilhelm Johnen Str, 52428 Jülich, Germany; Institute for Biological Data Science, Heinrich Heine University, Düsseldorf, 40225 Düsseldorf, Germany., Buell CR; Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA; Plant Resilience Institute, Michigan State University, East Lansing, MI 48824, USA. Electronic address: robin.buell@uga.edu., Finkers R; Plant Breeding, Wageningen University & Research, Plant Breeding, 6708 PB Wageningen, the Netherlands. Electronic address: richard.finkers@wur.nl.

Publikováno v: Molecular plant [Mol Plant] 2022 Mar 07; Vol. 15 (3), pp. 520-536. Date of Electronic Publication: 2022 Jan 10.

Complete mitogenome assemblies from a panel of 13 diverse potato taxa.

Autor: Achakkagari SR; Department of Plant Science, McGill University, Montreal, Canada., Bozan I; Department of Plant Science, McGill University, Montreal, Canada., Anglin NL; International Potato Center, Lima, Peru., Ellis D; International Potato Center, Lima, Peru., Tai HH; Fredericton Research and Development Centre, Agriculture and Agri-Food Canada, Fredericton, Canada., Strömvik MV; Department of Plant Science, McGill University, Montreal, Canada.

Publikováno v: Mitochondrial DNA. Part B, Resources [Mitochondrial DNA B Resour] 2021 Mar 15; Vol. 6 (3), pp. 894-897. Date of Electronic Publication: 2021 Mar 15.

Chromosome-scale genome assembly and annotation of the tetraploid potato cultivar Diacol Capiro adapted to the Andean region.

Autor: Reyes-Herrera, Paula H¹ (AUTHOR) phreyes@agrosavia.co, Delgadillo-Duran, Diego A¹ (AUTHOR), Flores-Gonzalez, Mirella² (AUTHOR), Mueller, Lukas A² (AUTHOR), Cristancho, Marco A³ (AUTHOR), Barrero, Luz Stella¹ (AUTHOR) lbarrero@agrosavia.co

Publikováno v: G3: Genes | Genomes | Genetics. Sep2024, Vol. 14 Issue 9, p1-14. 14p.