Soybean genomics research community strategic plan: A vision for 2024-2028.

Autor: Stupar RM; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, USA., Locke AM; USDA-ARS Soybean & Nitrogen Fixation Research Unit, Raleigh, North Carolina, USA., Allen DK; USDA-ARS Donald Danforth Plant Science Center, St. Louis, Missouri, USA., Stacey MG; Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA., Ma J; Department of Agronomy, Purdue University, West Lafayette, Indiana, USA., Weiss J; Smithbucklin for the United Soybean Board, St. Louis, Missouri, USA., Nelson RT; USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, Iowa, USA., Hudson ME; Department of Crop Sciences, University of Illinois, Urbana, Illinois, USA., Joshi T; Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA.; MU Institute for Data Science and Informatics, University of Missouri-Columbia, Columbia, Missouri, USA., Li Z; Department of Crop and Soil Sciences, and Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, Georgia, USA., Song Q; USDA-ARS Soybean Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Beltsville, Maryland, USA., Jedlicka JR; Farmer's Business Network, St. Louis, Missouri, USA., MacIntosh GC; Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, USA., Grant D; USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, Iowa, USA.; Department of Agronomy, Iowa State University, Ames, Iowa, USA., Parrott WA; Department of Crop and Soil Sciences, and Institute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, Georgia, USA.; Center for Applied Genetic Technologies, University of Georgia, Athens, Georgia, USA., Clemente TE; Department of Agronomy & Horticulture, University of Nebraska, Lincoln, Nebraska, USA., Stacey G; Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA., An YC; USDA-ARS Donald Danforth Plant Science Center, St. Louis, Missouri, USA., Aponte-Rivera J; Syngenta, Slater, Iowa, USA., Bhattacharyya MK; Department of Agronomy, Iowa State University, Ames, Iowa, USA., Baxter I; Donald Danforth Plant Science Center, St. Louis, Missouri, USA., Bilyeu KD; USDA-ARS Plant Genetics Research Unit, Columbia, Missouri, USA., Campbell JD; USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, Iowa, USA., Cannon SB; USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, Iowa, USA., Clough SJ; USDA-ARS Soybean/Maize Germplasm, Pathology and Genetics Research Unit, Urbana, Illinois, USA., Curtin SJ; USDA-ARS Plant Science Research Unit, St. Paul, Minnesota, USA., Diers BW; Department of Crop Sciences, University of Illinois, Urbana, Illinois, USA., Dorrance AE; Department of Plant Pathology, The Ohio State University, Wooster, Ohio, USA., Gillman JD; USDA-ARS Plant Genetics Research Unit, Columbia, Missouri, USA., Graef GL; Department of Agronomy & Horticulture, University of Nebraska, Lincoln, Nebraska, USA., Hancock CN; Department of Biological, Environmental, and Earth Sciences, University of South Carolina Aiken, Aiken, South Carolina, USA., Hudson KA; USDA-ARS Crop Production and Pest Control Research Unit, West Lafayette, Indiana, USA., Hyten DL; Department of Agronomy & Horticulture, University of Nebraska, Lincoln, Nebraska, USA., Kachroo A; Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, USA., Koebernick J; Department of Crop, Soil and Environmental Sciences, Auburn University, Auburn, Alabama, USA., Libault M; Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA., Lorenz AJ; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, USA., Mahan AL; USDA-ARS Soybean/Maize Germplasm, Pathology and Genetics Research Unit, Urbana, Illinois, USA., Massman JM; Corteva Agriscience, Johnston, Iowa, USA., McGinn M; Smithbucklin for the United Soybean Board, St. Louis, Missouri, USA., Meksem K; Department of Plant, Soil, and Agricultural Systems, Southern Illinois University, Carbondale, Illinois, USA., Okamuro JK; USDA-ARS Crop Production and Protection, Beltsville, Maryland, USA., Pedley KF; USDA-ARS Foreign Disease-Weed Science Research Unit, Ft. Detrick, Maryland, USA., Rainey KM; Department of Agronomy, Purdue University, West Lafayette, Indiana, USA., Scaboo AM; Division of Plant Science and Technology, University of Missouri, Columbia, Missouri, USA., Schmutz J; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.; HudsonAlpha Institute of Biotechnology, Huntsville, Alabama, USA., Song BH; Department of Biological Sciences, University of North Carolina at Charlotte, Charlotte, North Carolina, USA., Steinbrenner AD; Department of Biology, University of Washington, Seattle, Washington, USA., Stewart-Brown BB; Bayer Crop Science, St. Louis, Missouri, USA., Toth K; Inari Agriculture NV, Zwijnaarde, Ghent, Belgium., Wang D; Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan, USA., Weaver L; Smithbucklin for the United Soybean Board, St. Louis, Missouri, USA., Zhang B; School of Plant and Environmental Sciences, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, USA., Graham MA; USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, Iowa, USA., O'Rourke JA; USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, Iowa, USA.

Publikováno v: The plant genome [Plant Genome] 2024 Dec; Vol. 17 (4), pp. e20516. Date of Electronic Publication: 2024 Nov 21.

Genomic Selection for Yield and Seed Composition Traits Within an Applied Soybean Breeding Program.

Autor: Stewart-Brown BB; Institute of Plant Breeding, Genetics and Genomics and Dep. of Crop and Soil Sci., University of Georgia, Athens, GA 30602., Song Q; Soybean Genomics and Improvement Lab, USDA-ARS, Beltsville, MD 20705., Vaughn JN; Genomics and Bioinformatics Research Unit, USDA-ARS, Center for Applied Genetic Technologies, Athens, GA 30602., Li Z; Institute of Plant Breeding, Genetics and Genomics and Dep. of Crop and Soil Sci., University of Georgia, Athens, GA 30602 zli@uga.edu.

Publikováno v: G3 (Bethesda, Md.) [G3 (Bethesda)] 2019 Jul 09; Vol. 9 (7), pp. 2253-2265. Date of Electronic Publication: 2019 Jul 09.

SoyDNGP: a web-accessible deep learning framework for genomic prediction in soybean breeding.

Autor: Gao, Pengfei¹ (AUTHOR), Zhao, Haonan¹ (AUTHOR), Luo, Zheng¹ (AUTHOR), Lin, Yifan² (AUTHOR), Feng, Wanjie¹ (AUTHOR), Li, Yaling¹ (AUTHOR), Kong, Fanjiang³ (AUTHOR), Li, Xia¹ (AUTHOR) xli@mail.hzau.edu.cn, Fang, Chao³ (AUTHOR) xli@mail.hzau.edu.cn, Wang, Xutong^1,2 (AUTHOR) xli@mail.hzau.edu.cn

Publikováno v: Briefings in Bioinformatics. Nov2023, Vol. 24 Issue 6, p1-12. 12p.

Features and applications of haplotypes in crop breeding.

Autor: Bhat, Javaid Akhter¹ (AUTHOR), Yu, Deyue¹ (AUTHOR), Bohra, Abhishek² (AUTHOR), Ganie, Showkat Ahmad³ (AUTHOR) showkatmanzoorforever@gmail.com, Varshney, Rajeev K.^4,5 (AUTHOR) rajeev.varshney@murdoch.edu.au

Publikováno v: Communications Biology. 11/4/2021, Vol. 4 Issue 1, p1-12. 12p.

Gene disruption by structural mutations drives selection in US rice breeding over the last century.

Autor: Vaughn, Justin N.^1,2 (AUTHOR) justin.vaughn@usda.gov, Korani, Walid² (AUTHOR), Stein, Joshua C.³ (AUTHOR), Edwards, Jeremy D.⁴ (AUTHOR), Peterson, Daniel G.⁵ (AUTHOR), Simpson, Sheron A.¹ (AUTHOR), Youngblood, Ramey C.⁵ (AUTHOR), Grimwood, Jane⁶ (AUTHOR), Chougule, Kapeel³ (AUTHOR), Ware, Doreen H.^3,7 (AUTHOR), McClung, Anna M.⁴ (AUTHOR), Scheffler, Brian E.¹ (AUTHOR) justin.vaughn@usda.gov

Publikováno v: PLoS Genetics. 3/18/2021, Vol. 17 Issue 3, p1-22. 22p.