Zobrazeno 1 - 10
of 41
pro vyhledávání: '"Steven Zimmerly"'
Publikováno v:
PLoS ONE, Vol 7, Iss 11, p e49225 (2012)
Tetraloop-receptor interactions are prevalent structural units in RNAs, and include the GAAA/11-nt and GNRA-minor groove interactions. In this study, we have compiled a set of 78 nonredundant loop-helix interactions from X-ray crystal structures, and
Externí odkaz:
https://doaj.org/article/16a9c9179b044fc6a30f1f85e5309429
Autor:
Li Wu, Amy Du, Mechthild Pohlschroder, Kharissa L Shaw, Mari Gingery, Hamza Khan, Michael Abebe, Sumit Handa, Diego Arambula, Elizabeth Czornyj, Partho Ghosh, Jeff F. Miller, Huatao Guo, Steven Zimmerly, Minghsun Liu
Publikováno v:
Nucleic Acids Research
Nucleic acids research, vol 46, iss 1
Wu, L; Gingery, M; Abebe, M; Arambula, D; Czornyj, E; Handa, S; et al.(2018). Diversity-generating retroelements: Natural variation, classification and evolution inferred from a large-scale genomic survey. Nucleic Acids Research, 46(1), 11-24. doi: 10.1093/nar/gkx1150. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/1q07714k
Nucleic acids research, vol 46, iss 1
Wu, L; Gingery, M; Abebe, M; Arambula, D; Czornyj, E; Handa, S; et al.(2018). Diversity-generating retroelements: Natural variation, classification and evolution inferred from a large-scale genomic survey. Nucleic Acids Research, 46(1), 11-24. doi: 10.1093/nar/gkx1150. UC San Diego: Retrieved from: http://www.escholarship.org/uc/item/1q07714k
© The Author(s) 2017. Diversity-generating retroelements (DGRs) are novel genetic elements that use reverse transcription to generate vast numbers of sequence variants in specific target genes. Here, we present a detailed comparative bioinformatic a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::630032fc4248d29e56bd09b60ce99897
https://doi.org/10.1093/nar/gkx1150
https://doi.org/10.1093/nar/gkx1150
Autor:
Bonnie A. McNeil, Steven Zimmerly
Publikováno v:
RNA. 20:855-866
Group II introns are ribozymes in bacterial and organellar genomes that function as self-splicing introns and as retroelements. Previously, we reported that the group II intron C.te.I1 of Clostridium tetani alternatively splices in vivo to produce fi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f82264cefd33a5db950fb021ab650c95
https://doi.org/10.1261/rna.042440.113
https://doi.org/10.1261/rna.042440.113
Autor:
Li Wu, Adrian Duong, Runda Sun, Ashley M. Jarding, tony Li, Keyar S. Hood, Ryan A. E. Neufeld, Steven Zimmerly, Bonnie A. McNeil, Michael A Candales
Publikováno v:
Nucleic Acids Research
The Database for Bacterial Group II Introns (http://webapps2.ucalgary.ca/~groupii/index.html#) provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank. The website is divided into three sectio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6e0ccf9de492285021356775eec8b782
https://doi.org/10.1093/nar/gkr1043
https://doi.org/10.1093/nar/gkr1043
Publikováno v:
Nucleic Acids Research
Reverse transcriptases (RTs) are RNA-dependent DNA polymerases that usually function in the replication of selfish DNAs such as retrotransposons and retroviruses. Here, we have biochemically characterized a RT-related protein, AbiK, which is required
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e3a31f5870889b6cbeb97b87741ede7
http://europepmc.org/articles/PMC3177184
http://europepmc.org/articles/PMC3177184
Autor:
Dawn M. Simon, Steven Zimmerly
Publikováno v:
Nucleic Acids Research
Retroelements are usually considered to be eukaryotic elements because of the large number and variety in eukaryotic genomes. By comparison, reverse transcriptases (RTs) are rare in bacteria, with only three characterized classes: retrons, group II i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::15ba750edbc061746eb0ce26685ffd25
http://europepmc.org/articles/PMC2602772
http://europepmc.org/articles/PMC2602772
Autor:
Dinggeng Chai, Alan M. Lambowitz, Steven Zimmerly, Forrest Blocker, Lixin Dai, Jesse Gabel, Shan Qing Gu, Sergei Y. Noskov
Publikováno v:
Molecular Cell. 30:472-485
Group II introns are self-splicing ribozymes believed to be the ancestors of spliceosomal introns. Many group II introns encode reverse transcriptases that promote both RNA splicing and intron mobility to new genomic sites. Here we used a circular pe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df79433b25ef9a968c3c7728c4a6bab0
https://doi.org/10.1016/j.molcel.2008.04.001
https://doi.org/10.1016/j.molcel.2008.04.001
Publikováno v:
Wiley interdisciplinary reviews. RNA. 7(3)
Group II introns are catalytic RNAs (ribozymes) and retroelements found in the genomes of bacteria, archaebacteria, and organelles of some eukaryotes. The prototypical retroelement form consists of a structurally conserved RNA and a multidomain rever
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ee9ab5c76c8aa9791c558bb9273bfeb1
https://pubmed.ncbi.nlm.nih.gov/26876278
https://pubmed.ncbi.nlm.nih.gov/26876278
Autor:
Steven Zimmerly, Li Wu
Publikováno v:
Microbiology spectrum. 3(2)
Reverse transcriptases (RTs) are usually thought of as eukaryotic enzymes, but they are also present in bacteria and likely originated in bacteria and migrated to eukaryotes. Only three types of bacterial retroelements have been substantially charact
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c9d54b89fd1f76fd2fbd7dbab9490606
https://pubmed.ncbi.nlm.nih.gov/26104699
https://pubmed.ncbi.nlm.nih.gov/26104699