Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).

Autor: Jolene Ramsey, Brenley McIntosh, Daniel Renfro, Suzanne A Aleksander, Sandra LaBonte, Curtis Ross, Adrienne E Zweifel, Nathan Liles, Shabnam Farrar, Jason J Gill, Ivan Erill, Sarah Ades, Tanya Z Berardini, Jennifer A Bennett, Siobhan Brady, Robert Britton, Seth Carbon, Steven M Caruso, Dave Clements, Ritu Dalia, Meredith Defelice, Erin L Doyle, Iddo Friedberg, Susan M R Gurney, Lee Hughes, Allison Johnson, Jason M Kowalski, Donghui Li, Ruth C Lovering, Tamara L Mans, Fiona McCarthy, Sean D Moore, Rebecca Murphy, Timothy D Paustian, Sarah Perdue, Celeste N Peterson, Birgit M Prüß, Margaret S Saha, Robert R Sheehy, John T Tansey, Louise Temple, Alexander William Thorman, Saul Trevino, Amy Cheng Vollmer, Virginia Walbot, Joanne Willey, Deborah A Siegele, James C Hu

Publikováno v: PLoS Computational Biology, Vol 17, Iss 10, p e1009463 (2021)

Experimental data about gene functions curated from the primary literature have enormous value for research scientists in understanding biology. Using the Gene Ontology (GO), manual curation by experts has provided an important resource for studying

Externí odkaz: https://doaj.org/article/0ae93bcac59543e5ab49b18ba091b71d

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.

Autor: Welkin H Pope, Deborah Jacobs-Sera, Daniel A Russell, Craig L Peebles, Zein Al-Atrache, Turi A Alcoser, Lisa M Alexander, Matthew B Alfano, Samantha T Alford, Nichols E Amy, Marie D Anderson, Alexander G Anderson, Andrew A S Ang, Manuel Ares, Amanda J Barber, Lucia P Barker, Jonathan M Barrett, William D Barshop, Cynthia M Bauerle, Ian M Bayles, Katherine L Belfield, Aaron A Best, Agustin Borjon, Charles A Bowman, Christine A Boyer, Kevin W Bradley, Victoria A Bradley, Lauren N Broadway, Keshav Budwal, Kayla N Busby, Ian W Campbell, Anne M Campbell, Alyssa Carey, Steven M Caruso, Rebekah D Chew, Chelsea L Cockburn, Lianne B Cohen, Jeffrey M Corajod, Steven G Cresawn, Kimberly R Davis, Lisa Deng, Dee R Denver, Breyon R Dixon, Sahrish Ekram, Sarah C R Elgin, Angela E Engelsen, Belle E V English, Marcella L Erb, Crystal Estrada, Laura Z Filliger, Ann M Findley, Lauren Forbes, Mark H Forsyth, Tyler M Fox, Melissa J Fritz, Roberto Garcia, Zindzi D George, Anne E Georges, Christopher R Gissendanner, Shannon Goff, Rebecca Goldstein, Kobie C Gordon, Russell D Green, Stephanie L Guerra, Krysta R Guiney-Olsen, Bridget G Guiza, Leila Haghighat, Garrett V Hagopian, Catherine J Harmon, Jeremy S Harmson, Grant A Hartzog, Samuel E Harvey, Siping He, Kevin J He, Kaitlin E Healy, Ellen R Higinbotham, Erin N Hildebrandt, Jason H Ho, Gina M Hogan, Victoria G Hohenstein, Nathan A Holz, Vincent J Huang, Ericka L Hufford, Peter M Hynes, Arrykka S Jackson, Erica C Jansen, Jonathan Jarvik, Paul G Jasinto, Tuajuanda C Jordan, Tomas Kasza, Murray A Katelyn, Jessica S Kelsey, Larisa A Kerrigan, Daryl Khaw, Junghee Kim, Justin Z Knutter, Ching-Chung Ko, Gail V Larkin, Jennifer R Laroche, Asma Latif, Kohana D Leuba, Sequoia I Leuba, Lynn O Lewis, Kathryn E Loesser-Casey, Courtney A Long, A Javier Lopez, Nicholas Lowery, Tina Q Lu, Victor Mac, Isaac R Masters, Jazmyn J McCloud, Molly J McDonough, Andrew J Medenbach, Anjali Menon, Rachel Miller, Brandon K Morgan, Patrick C Ng, Elvis Nguyen, Katrina T Nguyen, Emilie T Nguyen, Kaylee M Nicholson, Lindsay A Parnell, Caitlin E Peirce, Allison M Perz, Luke J Peterson, Rachel E Pferdehirt, Seegren V Philip, Kit Pogliano, Joe Pogliano, Tamsen Polley, Erica J Puopolo, Hannah S Rabinowitz, Michael J Resiss, Corwin N Rhyan, Yetta M Robinson, Lauren L Rodriguez, Andrew C Rose, Jeffrey D Rubin, Jessica A Ruby, Margaret S Saha, James W Sandoz, Judith Savitskaya, Dale J Schipper, Christine E Schnitzler, Amanda R Schott, J Bradley Segal, Christopher D Shaffer, Kathryn E Sheldon, Erica M Shepard, Jonathan W Shepardson, Madav K Shroff, Jessica M Simmons, Erika F Simms, Brandy M Simpson, Kathryn M Sinclair, Robert L Sjoholm, Ingrid J Slette, Blaire C Spaulding, Clark L Straub, Joseph Stukey, Trevor Sughrue, Tin-Yun Tang, Lyons M Tatyana, Stephen B Taylor, Barbara J Taylor, Louise M Temple, Jasper V Thompson, Michael P Tokarz, Stephanie E Trapani, Alexander P Troum, Jonathan Tsay, Anthony T Tubbs, Jillian M Walton, Danielle H Wang, Hannah Wang, John R Warner, Emilie G Weisser, Samantha C Wendler, Kathleen A Weston-Hafer, Hilary M Whelan, Kurt E Williamson, Angelica N Willis, Hannah S Wirtshafter, Theresa W Wong, Phillip Wu, Yun jeong Yang, Brandon C Yee, David A Zaidins, Bo Zhang, Melina Y Zúniga, Roger W Hendrix, Graham F Hatfull

Publikováno v: PLoS ONE, Vol 6, Iss 1, p e16329 (2011)

Mycobacteriophages are viruses that infect mycobacterial hosts such as Mycobacterium smegmatis and Mycobacterium tuberculosis. All mycobacteriophages characterized to date are dsDNA tailed phages, and have either siphoviral or myoviral morphotypes. H

Externí odkaz: https://doaj.org/article/a9e00ac52f7f45099a82269efcbad2c5

Evidence of a Set of Core-Function Genes in 16 Bacillus Podoviral Genomes with Considerable Genomic Diversity

Autor: Ahmed Ismail, Tanuj Saini, Ahmed Al Qaffas, Ivan Erill, Steven M. Caruso, Louise Temple, Allison A. Johnson

Publikováno v: Viruses, Vol 15, Iss 2, p 276 (2023)

Bacteriophage genomes represent an enormous level of genetic diversity and provide considerable potential to acquire new insights about viral genome evolution. In this study, the genome sequences of sixteen Bacillus-infecting bacteriophages were expl

Externí odkaz: https://doaj.org/article/b3fdc83d2b384837ac7eb1630f132385

The transcriptional regulator CtrA controls gene expression in Alphaproteobacteria phages : Evidence for a lytic deferment pathway

Autor: Elia Mascolo, Satish Adhikari, Steven M. Caruso, Tagide deCarvalho, Anna Folch Salvador, Joan Serra-Sagristà, Ry Young, Ivan Erill, Patrick D. Curtis

Pilitropic and flagellotropic phages adsorb to bacterial pili and flagella. These phages have long been used to investigate multiple aspects of bacterial physiology, such as the cell cycle control in the Caulobacterales. Targeting cellular appendages

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a58da63ad6e8b93181860378adec36dc
https://ddd.uab.cat/record/265662

Plos Computational Biology

Autor: Tamara L. Mans, Seth Carbon, Susan M. R. Gurney, Meredith Defelice, Larissa K. Temple, Ritu R. Dalia, Robert A. Britton, Birgit M. Prüß, Joanne M. Willey, Suzanne A. Aleksander, Jason J. Gill, Lee E. Hughes, Ruth C. Lovering, Virginia Walbot, Erin L. Doyle, Donghui Li, Shabnam Farrar, Sean D. Moore, Jolene Ramsey, Iddo Friedberg, Deborah A. Siegele, Tanya Z. Berardini, B. K. McIntosh, Alexander William Thorman, Nathan M. Liles, Margaret S. Saha, Ivan Erill, Allison Johnson, John T. Tansey, Celeste Peterson, Rebecca L. Murphy, Jason M. Kowalski, Daniel P. Renfro, Timothy D. Paustian, James C. Hu, Sarah E. Ades, Sandra A. LaBonte, Adrienne E. Zweifel, Curtis Ross, Fiona M. McCarthy, Steven M. Caruso, Sarah Perdue, Dave Clements, Amy Cheng Vollmer, Robert R. Sheehy, Jennifer A. Bennett, Siobhan M. Brady, Saul R. Trevino

Publikováno v: PLoS Computational Biology, Vol 17, Iss 10 (2021)
PLoS Computational Biology, Vol 17, Iss 10, p e1009463 (2021)
PLoS computational biology, vol 17, iss 10
PLoS Computational Biology

Experimental data about gene functions curated from the primary literature have enormous value for research scientists in understanding biology. Using the Gene Ontology (GO), manual curation by experts has provided an important resource for studying

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2136d9c79b7979202d798ea2c18c708e
https://hdl.handle.net/10919/109480