Design and validation of a 90K SNP genotyping assay for the water buffalo (Bubalus bubalis).

Autor: Daniela Iamartino, Ezequiel L Nicolazzi, Curtis P Van Tassell, James M Reecy, Eric R Fritz-Waters, James E Koltes, Stefano Biffani, Tad S Sonstegard, Steven G Schroeder, Paolo Ajmone-Marsan, Riccardo Negrini, Rolando Pasquariello, Paola Ramelli, Angelo Coletta, José F Garcia, Ahmad Ali, Luigi Ramunno, Gianfranco Cosenza, Denise A A de Oliveira, Marcela G Drummond, Eduardo Bastianetto, Alessandro Davassi, Ali Pirani, Fiona Brew, John L Williams

Publikováno v: PLoS ONE, Vol 12, Iss 10, p e0185220 (2017)

The availability of the bovine genome sequence and SNP panels has improved various genomic analyses, from exploring genetic diversity to aiding genetic selection. However, few of the SNP on the bovine chips are polymorphic in buffalo, therefore a pan

Externí odkaz: https://doaj.org/article/314be7e3038a447d898b5e02adcea23e

A Pilot Detection and Associate Study of Gene Presence-Absence Variation in Holstein Cattle

Autor: Clarissa Boschiero, Mahesh Neupane, Liu Yang, Steven G. Schroeder, Wenbin Tuo, Li Ma, Ransom L. Baldwin, Curtis P. Van Tassell, George E. Liu

Publikováno v: Animals, Vol 14, Iss 13, p 1921 (2024)

Presence-absence variations (PAVs) are important structural variations, wherein a genomic segment containing one or more genes is present in some individuals but absent in others. While PAVs have been extensively studied in plants, research in cattle

Externí odkaz: https://doaj.org/article/247cd9404ccc4dacb2512ab4a3638e37

Genetic Diversity and Phylogenetic Relationships of Annual and Perennial Glycine Species

Autor: Eun-Young Hwang, He Wei, Steven G. Schroeder, Edward W. Fickus, Charles V. Quigley, Patrick Elia, Susan Araya, Faming Dong, Larissa Costa, Marcio Elias Ferreira, Perry B. Cregan, Qijian Song

Publikováno v: G3: Genes, Genomes, Genetics, Vol 9, Iss 7, Pp 2325-2336 (2019)

We have estimated the average genetic diversity of two Glycine annual and six perennial species based upon 76 orthologous gene sets and performed phylogenetic analysis, divergence analysis and tests for departure from neutrality of the eight species

Externí odkaz: https://doaj.org/article/be96c573c837483987cf7b6f595c5b85

Agricultural data management and sharing: Best practices and case study

Autor: Erica M. Johns, Carolyn Jackson, Carol C. Barford, Megan Sheffield, Kerrie Geil, Steven G. Schroeder, Adam Kriesberg, Dan K. Arthur, Stephanie Ritchie, Inga Haugen, Cynthia Parr, Eli K. Moore

Publikováno v: Agronomy Journal. 114:2624-2634

Agricultural data are crucial to many aspects of production, commerce, and research involved in feeding the global community. However, in most agricultural research disciplines standard best practices for data management and publication do not exist.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fa1525fafd712ff771c91dc73c796338
https://doi.org/10.1002/agj2.20639

Genetic Diversity and Phylogenetic Relationships of Annual and Perennial Glycine Species

Autor: He Wei, Charles V. Quigley, Patrick Elia, Eun-Young Hwang, Edward W. Fickus, Faming Dong, Qijian Song, Larissa Costa, Perry B. Cregan, Márcio Elias Ferreira, Steven G. Schroeder, Susan Araya

Publikováno v: G3: Genes, Genomes, Genetics, Vol 9, Iss 7, Pp 2325-2336 (2019)
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA-Alice)
Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA

We have estimated the average genetic diversity of two Glycine annual and six perennial species based upon 76 orthologous gene sets and performed phylogenetic analysis, divergence analysis and tests for departure from neutrality of the eight species

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::94a42d320b1155fe154213bba50912e7
http://g3journal.org/lookup/doi/10.1534/g3.119.400220