Cowpea–Soybean Synteny Clarified through an Improved Genetic Map

Autor: Mitchell R. Lucas, Ndeye-Ndack Diop, Steve Wanamaker, Jeffery D. Ehlers, Philip A. Roberts, Timothy J. Close

Publikováno v: The Plant Genome, Vol 4, Iss 3, Pp 218-225 (2011)

Linkage mapping is relevant to modern plant biology and provides a framework for downstream analyses including quantitative trait loci identification, map-based cloning, assessment of diversity, association mapping, and molecular breeding. Here, we r

Externí odkaz: https://doaj.org/article/4c4b9c31844a49faaaecc7d9c2402a21

Combinatorial pooling enables selective sequencing of the barley gene space.

Autor: Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna R Bhat, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Serdar Bozdag, Ming-Cheng Luo, Timothy J Close

Publikováno v: PLoS Computational Biology, Vol 9, Iss 4, p e1003010 (2013)

For the vast majority of species - including many economically or ecologically important organisms, progress in biological research is hampered due to the lack of a reference genome sequence. Despite recent advances in sequencing technologies, severa

Externí odkaz: https://doaj.org/article/5fa96e19829943ec800e8e510ec5fa63

Novo&Stitch: accurate reconciliation of genome assemblies via optical maps

Autor: Audrey M. V. Ah-Fong, Howard S. Judelson, Steve Wanamaker, Stefano Lonardi, Weihua Pan

Publikováno v: Bioinformatics
Bioinformatics (Oxford, England), vol 34, iss 13

Motivation De novo genome assembly is a challenging computational problem due to the high repetitive content of eukaryotic genomes and the imperfections of sequencing technologies (i.e. sequencing errors, uneven sequencing coverage and chimeric reads

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9567f390d3169b119fe66d87fea24830
https://doi.org/10.1093/bioinformatics/bty255

The genome of cowpea ( Vigna unguiculata [L.] Walp.)

Autor: Samuel Hokin, Steven B. Cannon, Tingting Zhu, Jansen R. P. Santos, Sassoum Lo, Jerome Verdier, María Muñoz-Amatriaín, Shengqiang Shu, Qihua Liang, Timothy J. Close, Abid Hasan, Arsenio Ndeve, Steve Wanamaker, Jaroslav Doležel, Hind Alhakami, Andrew Farmer, Alan H. Schulman, Philip A. Roberts, Stefano Lonardi, Jan Vrána, Jaakko Tanskanen, Rachid Ounit, Ming-Cheng Luo

Publikováno v: Plant Journal
Plant Journal, Wiley, 2019, 98 (5), pp.767-782. ⟨10.1111/tpj.14349⟩
Plant Journal, Wiley, 2019, 98 (5), pp.767-782. ⟨10.1101/518969⟩
The Plant Journal
Plant Journal 5 (98), 767-782. (2019)
The Plant journal : for cell and molecular biology, vol 98, iss 5
Plant Journal, 2019, 98 (5), pp.767-782. ⟨10.1111/tpj.14349⟩

Summary Cowpea (Vigna unguiculata [L.] Walp.) is a major crop for worldwide food and nutritional security, especially in sub‐Saharan Africa, that is resilient to hot and drought‐prone environments. An assembly of the single‐haplotype inbred gen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e2b8916f6b53493c45e4cd030fb63bdc
https://hal.archives-ouvertes.fr/hal-02449486

Sequencing of 15 622 gene‐bearing BACs clarifies the gene‐dense regions of the barley genome

Autor: Anders Falk, Jane Grimwood, Dave Kudrna, Nils Stein, Rod A. Wing, Ming-Cheng Luo, Matthew J. Moscou, Pascal Condamine, Kavitha Madishetty, Leila Feiz, Prasanna R. Bhat, Phil Bregitzer, Josh Resnik, Yaqin Ma, Jeremy Schmutz, Andris Kleinhofs, Hana Šimková, Roger P. Wise, Shane Heinen, Jaroslav Dolezel, Denisa Duma, Matthew Alpert, Lothar Altschmied, Rachid Ounit, Marco Beccuti, Andreas Graner, Peggy G. Lemaux, Muharrem Dilbirligi, Francesca Cordero, Perry Gustafson, Frank You, Timothy J. Close, Yonghui Wu, Tao Jiang, Jafar Mammadov, Gary J. Muehlbauer, Patrick M. Hayes, Heather Witt, Shiaoman Chao, Laurel Cooper, Jan T. Svensson, Steve Wanamaker, Hamid Mirebrahim, Jie Zheng, Serdar Bozdag, María Muñoz-Amatriaín, Stefano Lonardi, Edmundo Rodriguez, Tom Blake

Publikováno v: The Plant Journal
Muñoz-Amatriaín, M; Lonardi, S; Luo, M; Madishetty, K; Svensson, JT; Moscou, MJ; et al.(2015). Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. Plant Journal, 84(1), 216-227. doi: 10.1111/tpj.12959. UC Riverside: Retrieved from: http://www.escholarship.org/uc/item/6b56x7nt

Summary Barley (Hordeum vulgare L.) possesses a large and highly repetitive genome of 5.1 Gb that has hindered the development of a complete sequence. In 2012, the International Barley Sequencing Consortium released a resource integrating whole‐gen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::361a2a258a3886f92e525e368fda08eb
http://europepmc.org/articles/PMC5014227