Zobrazeno 1 - 7
of 7
pro vyhledávání: '"Stephan Majda"'
Autor:
Angela Kranz, Tino Polen, Christian Kotulla, Annette Arndt, Graziella Bosco, Michael Bussmann, Ava Chattopadhyay, Annette Cramer, Cedric-Farhad Davoudi, Ursula Degner, Ramon Diesveld, Raphael Freiherr von Boeselager, Kim Gärtner, Cornelia Gätgens, Tobias Georgi, Christian Geraths, Sabine Haas, Antonia Heyer, Max Hünnefeld, Takeru Ishige, Armin Kabus, Nicolai Kallscheuer, Larissa Kever, Simon Klaffl, Britta Kleine, Martina Kočan, Abigail Koch-Koerfges, Kim J. Kraxner, Andreas Krug, Aileen Krüger, Andreas Küberl, Mohamed Labib, Christian Lange, Christina Mack, Tomoya Maeda, Regina Mahr, Stephan Majda, Andrea Michel, Xenia Morosov, Olga Müller, Arun M. Nanda, Jens Nickel, Jennifer Pahlke, Eugen Pfeifer, Laura Platzen, Paul Ramp, Doris Rittmann, Steffen Schaffer, Sandra Scheele, Stephanie Spelberg, Julia Schulte, Jens-Eric Schweitzer, Georg Sindelar, Ulrike Sorger-Herrmann, Markus Spelberg, Corinna Stansen, Apilaasha Tharmasothirajan, Jan van Ooyen, Philana van Summeren-Wesenhagen, Michael Vogt, Sabrina Witthoff, Lingfeng Zhu, Bernhard J. Eikmanns, Marco Oldiges, Georg Schaumann, Meike Baumgart, Melanie Brocker, Lothar Eggeling, Roland Freudl, Julia Frunzke, Jan Marienhagen, Volker F. Wendisch, Michael Bott
Publikováno v:
Scientific Data, Vol 9, Iss 1, Pp 1-10 (2022)
Abstract Corynebacterium glutamicum is the major host for the industrial production of amino acids and has become one of the best studied model organisms in microbial biotechnology. Rational strain construction has led to an improvement of producer s
Externí odkaz:
https://doaj.org/article/40c95f8ff8694597bb7bae3c633c682c
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-11 (2021)
Majda and colleagues employ a comparative genomic approach to investigate the effect of nutrient and carbon shortage on chrysophyte evolution. Their results indicate that heterotrophic taxa have reduced genome size and higher GC content compared to p
Externí odkaz:
https://doaj.org/article/0ab9fcfb9ba041fdb0be1e66657d5bfe
Autor:
Adrian Fritz, Peter Hofmann, Stephan Majda, Eik Dahms, Johannes Dröge, Jessika Fiedler, Till R. Lesker, Peter Belmann, Matthew Z. DeMaere, Aaron E. Darling, Alexander Sczyrba, Andreas Bremges, Alice C. McHardy
Publikováno v:
Microbiome, Vol 7, Iss 1, Pp 1-12 (2019)
Abstract Background Shotgun metagenome data sets of microbial communities are highly diverse, not only due to the natural variation of the underlying biological systems, but also due to differences in laboratory protocols, replicate numbers, and sequ
Externí odkaz:
https://doaj.org/article/691fffe684ce4951892d70988eef06af
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-11 (2021)
Communications Biology
Communications Biology
Phototrophic eukaryotes have evolved mainly by the primary or secondary uptake of photosynthetic organisms. A return to heterotrophy occurred multiple times in various protistan groups such as Chrysophyceae, despite the expected advantage of autotrop
Autor:
Alice C. McHardy, Eik Dahms, Jessika Fiedler, Matthew Z. DeMaere, Adrian Fritz, Alexander Sczyrba, Till Robin Lesker, Aaron E. Darling, Johannes Dröge, Peter Belmann, Stephan Majda, Andreas Bremges, Peter Hofmann
Publikováno v:
Microbiome
Microbiome, Vol 7, Iss 1, Pp 1-12 (2019)
Microbiome, Vol 7, Iss 1, Pp 1-12 (2019)
Background Shotgun metagenome data sets of microbial communities are highly diverse, not only due to the natural variation of the underlying biological systems, but also due to differences in laboratory protocols, replicate numbers, and sequencing te
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ac0f98a2dbff303548178c4d2d3214e1
https://hdl.handle.net/10453/127868
https://hdl.handle.net/10453/127868
Autor:
Alexander Sczyrba, Peter Hofmann, Peter Belmann, David Koslicki, Stefan Janssen, Johannes Dröge, Ivan Gregor, Stephan Majda, Jessika Fiedler, Eik Dahms, Andreas Bremges, Adrian Fritz, Ruben Garrido-Oter, Tue Sparholt Jørgensen, Nicole Shapiro, Philip D. Blood, Alexey Gurevich, Yang Bai, Dmitrij Turaev, Matthew Z. DeMaere, Rayan Chikhi, Niranjan Nagarajan, Christopher Quince, Fernando Meyer, Monika Balvoit, Lars Hestbjerg Hansen, Søren J. Sørensen, Burton K. H. Chia, Bertrand Denis, Jeff L. Froula, Zhong Wang, Robert Egan, Dongwan Don Kang, Jeffrey J. Cook, Charles Deltel, Michael Beckstette, Claire Lemaitre, Pierre Peterlongo, Guillaume Rizk, Dominique Lavenier, Yu-Wei Wu, Steven W. Singer, Chirag Jain, Marc Strous, Heiner Klingenberg, Peter Meinicke, Michael Barton, Thomas Lingner, Hsin-Hung Lin, Yu-Chieh Liao, Genivaldo Gueiros Z. Silva, Daniel A. Cuevas, Robert A. Edwards, Surya Saha, Vitor C. Piro, Bernhard Y. Renard, Mihai Pop, Hans-Peter Klenk, Markus Göker, Nikos C. Kyrpides, Tanja Woyke, Julia A. Vorholt, Paul Schulze-Lefert, Edward M. Rubin, Aaron E. Darling, Thomas Rattei, Alice C. McHardy
Publikováno v:
Nature Methods
Nature Methods, 2017, 14 (11), pp.1063-1071. ⟨10.1038/nmeth.4458⟩
Nature Methods, Nature Publishing Group, 2017, 14 (11), pp.1063-1071. ⟨10.1038/nmeth.4458⟩
Sczyrba, A, Hofmann, P, Belmann, P, Koslicki, D, Janssen, S, Droege, J, Gregor, I, Majda, S, Fiedler, J, Dahms, E, Bremges, A, Fritz, A, Garrido-Oter, R, Jorgensen, T S, Shapiro, N, Blood, P D, Gurevich, A, Bai, Y, Turaev, D, DeMaere, M Z, Chikhi, R, Nagarajan, N, Quince, C, Hansen, L H, Sorensen, S J, Chia, B KH, Denis, B, Froula, J L, Wang, Z L, Egan, R, Kang, D D, Cook, J J, Deltel, C, Beckstette, M, Lemaitre, C, Peterlongo, P, Rizk, G, Lavenier, D, Wu, Y-W, Singer, S W, Jain, C, Strous, M, Klingenberg, H, Meinicke, P, Barton, M, Lingner, T, Lin, H-H, Liao, Y-C, Silva, G G Z, Cuevas, D A, Edwards, R A, Saha, S, Piro, V C, Renard, B Y, Pop, M, Klenk, H-P, Goeker, M, Kyrpides, N, Woyke, T, Vorholt, J A, Schulze-Lefert, P, Rubin, E M, Darling, A E, Rattei, T & McHardy, A C 2017, ' Critical Assessment of Metagenome Interpretation− a benchmark of computational metagenomics software ', bioRxiv, pp. 99127 . https://doi.org/10.1101/099127
Nature Methods, 2017, 14 (11), pp.1063-1071. ⟨10.1038/nmeth.4458⟩
Nature Methods, Nature Publishing Group, 2017, 14 (11), pp.1063-1071. ⟨10.1038/nmeth.4458⟩
Sczyrba, A, Hofmann, P, Belmann, P, Koslicki, D, Janssen, S, Droege, J, Gregor, I, Majda, S, Fiedler, J, Dahms, E, Bremges, A, Fritz, A, Garrido-Oter, R, Jorgensen, T S, Shapiro, N, Blood, P D, Gurevich, A, Bai, Y, Turaev, D, DeMaere, M Z, Chikhi, R, Nagarajan, N, Quince, C, Hansen, L H, Sorensen, S J, Chia, B KH, Denis, B, Froula, J L, Wang, Z L, Egan, R, Kang, D D, Cook, J J, Deltel, C, Beckstette, M, Lemaitre, C, Peterlongo, P, Rizk, G, Lavenier, D, Wu, Y-W, Singer, S W, Jain, C, Strous, M, Klingenberg, H, Meinicke, P, Barton, M, Lingner, T, Lin, H-H, Liao, Y-C, Silva, G G Z, Cuevas, D A, Edwards, R A, Saha, S, Piro, V C, Renard, B Y, Pop, M, Klenk, H-P, Goeker, M, Kyrpides, N, Woyke, T, Vorholt, J A, Schulze-Lefert, P, Rubin, E M, Darling, A E, Rattei, T & McHardy, A C 2017, ' Critical Assessment of Metagenome Interpretation− a benchmark of computational metagenomics software ', bioRxiv, pp. 99127 . https://doi.org/10.1101/099127
In metagenome analysis, computational methods for assembly, taxonomic profiling and binning are key components facilitating downstream biological data interpretation. However, a lack of consensus about benchmarking datasets and evaluation metrics com
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5b973ea1c302f40d8f61a7de08a748e8
https://hal.science/hal-01633525
https://hal.science/hal-01633525
Autor:
Andreas Bremges, Charles Deltel, Jeff Froula, Marc Strous, Tue Sparholt Jørgensen, Alexander Sczyrba, Søren J. Sørensen, Michael D. Barton, Hsin-Hung Lin, Aaron E. Darling, Nikos C. Kyrpides, Surya Saha, Claire Lemaitre, Ivan Gregor, Julia A. Vorholt, Chirag Jain, David Koslicki, Alexey Gurevich, Lars Hestbjerg Hansen, Dominique Lavenier, Steven W. Singer, Peter Hofmann, Philip D. Blood, Peter Belmann, Stephan Majda, Jeffrey J. Cook, Dongwan Don Kang, Peter Meinicke, Genivaldo G. Z. Silva, Michael Beckstette, Matthew Z. DeMaere, Yang Bai, Zhong Wang, Monika Balvočiūtė, Alice C. McHardy, Hans-Peter Klenk, Yu Wei Wu, Burton Kuan Hui Chia, Markus Göker, Nicole Shapiro, Rayan Chikhi, Thomas Rattei, Christopher Quince, Edward M. Rubin, Niranjan Nagarajan, Paul Schulze-Lefert, Thomas Lingner, Tanja Woyke, Bernhard Y. Renard, Eik Dahms, Robert Egan, Pierre Peterlongo, Yu-Chieh Liao, Daniel A. Cuevas, Mihai Pop, Dmitrij Turaev, Robert Edwards, Vitor C. Piro, Guillaume Rizk, Fernando Meyer, Jessika Fiedler, Adrian Fritz, Ruben Garrido-Oter, Bertrand Denis, Johannes Dröge, Stefan Janssen, Heiner Klingenberg
Publikováno v:
Nature Methods, 14 (11)
Sczyrba, A, Hofmann, P, Belmann, P, Koslicki, D, Janssen, S, Dröge, J, Gregor, I, Majda, S, Fiedler, J, Dahms, E, Bremges, A, Fritz, A, Garrido-Oter, R, Jørgensen, T S, Shapiro, N, Blood, P D, Gurevich, A, Bai, Y, Turaev, D, DeMaere, M Z, Chikhi, R, Nagarajan, N, Quince, C, Meyer, F, Balvociute, M, Hansen, L H, Sørensen, S J, Chia, B K H, Denis, B, Froula, J L, Wang, Z, Egan, R, Kang, D D, Cook, J J, Deltel, C, Beckstette, M, Lemaitre, C, Peterlongo, P, Rizk, G, Lavenier, D, Wu, Y-W, Singer, S W, Jain, C, Strous, M, Klingenberg, H, Meinicke, P, Barton, M D, Lingner, T, Lin, H-H, Liao, Y-C, Silva, G G Z, Cuevas, D A, Edwards, R A, Saha, S, Piro, V C, Renard, B Y, Pop, M, Klenk, H-P, Göker, M, Kyrpides, N C, Woyke, T, Vorholt, J A, Schulze-Lefert, P, Rubin, E M, Darling, A E, Rattei, T & McHardy, A C 2017, ' Critical Assessment of Metagenome Interpretation : a benchmark of metagenomics software ', Nature Methods, vol. 14, no. 11, pp. 1063-1071 . https://doi.org/10.1038/NMETH.4458
Nature Methods
Sczyrba, A, Hofmann, P, Belmann, P, Koslicki, D, Janssen, S, Droege, J, Gregor, I, Majda, S, Fiedler, J, Dahms, E, Bremges, A, Fritz, A, Garrido-Oter, R, Jorgensen, T S, Shapiro, N, Blood, P D, Gurevich, A, Bai, Y, Turaev, D, DeMaere, M Z, Chikhi, R, Nagarajan, N, Quince, C, Meyer, F, Balvociute, M, Hansen, L H, Sorensen, S J, Chia, B K H, Denis, B, Froula, J L, Wang, Z, Egan, R, Kang, D D, Cook, J J, Deltel, C, Beckstette, M, Lemaitre, C, Peterlongo, P, Rizk, G, Lavenier, D, Wu, Y-W, Singer, S W, Jain, C, Strous, M, Klingenberg, H, Meinicke, P, Barton, M D, Lingner, T, Lin, H-H, Liao, Y-C, Silva, G G Z, Cuevas, D A, Edwards, R A, Saha, S, Piro, V C, Renard, B Y, Pop, M, Klenk, H-P, Goeker, M, Kyrpides, N C, Woyke, T, Vorholt, J A, Schulze-Lefert, P, Rubin, E M, Darling, A E, Rattei, T & McHardy, A C 2017, ' Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software ', Nature Methods, vol. 14, no. 11, pp. 1063-1071 . https://doi.org/10.1038/NMETH.4458
Nature methods, vol 14, iss 11
Nature methods
Sczyrba, A, Hofmann, P, Belmann, P, Koslicki, D, Janssen, S, Dröge, J, Gregor, I, Majda, S, Fiedler, J, Dahms, E, Bremges, A, Fritz, A, Garrido-Oter, R, Jørgensen, T S, Shapiro, N, Blood, P D, Gurevich, A, Bai, Y, Turaev, D, DeMaere, M Z, Chikhi, R, Nagarajan, N, Quince, C, Meyer, F, Balvociute, M, Hansen, L H, Sørensen, S J, Chia, B K H, Denis, B, Froula, J L, Wang, Z, Egan, R, Kang, D D, Cook, J J, Deltel, C, Beckstette, M, Lemaitre, C, Peterlongo, P, Rizk, G, Lavenier, D, Wu, Y-W, Singer, S W, Jain, C, Strous, M, Klingenberg, H, Meinicke, P, Barton, M D, Lingner, T, Lin, H-H, Liao, Y-C, Silva, G G Z, Cuevas, D A, Edwards, R A, Saha, S, Piro, V C, Renard, B Y, Pop, M, Klenk, H-P, Göker, M, Kyrpides, N C, Woyke, T, Vorholt, J A, Schulze-Lefert, P, Rubin, E M, Darling, A E, Rattei, T & McHardy, A C 2017, ' Critical Assessment of Metagenome Interpretation : a benchmark of metagenomics software ', Nature Methods, vol. 14, no. 11, pp. 1063-1071 . https://doi.org/10.1038/NMETH.4458
Nature Methods
Sczyrba, A, Hofmann, P, Belmann, P, Koslicki, D, Janssen, S, Droege, J, Gregor, I, Majda, S, Fiedler, J, Dahms, E, Bremges, A, Fritz, A, Garrido-Oter, R, Jorgensen, T S, Shapiro, N, Blood, P D, Gurevich, A, Bai, Y, Turaev, D, DeMaere, M Z, Chikhi, R, Nagarajan, N, Quince, C, Meyer, F, Balvociute, M, Hansen, L H, Sorensen, S J, Chia, B K H, Denis, B, Froula, J L, Wang, Z, Egan, R, Kang, D D, Cook, J J, Deltel, C, Beckstette, M, Lemaitre, C, Peterlongo, P, Rizk, G, Lavenier, D, Wu, Y-W, Singer, S W, Jain, C, Strous, M, Klingenberg, H, Meinicke, P, Barton, M D, Lingner, T, Lin, H-H, Liao, Y-C, Silva, G G Z, Cuevas, D A, Edwards, R A, Saha, S, Piro, V C, Renard, B Y, Pop, M, Klenk, H-P, Goeker, M, Kyrpides, N C, Woyke, T, Vorholt, J A, Schulze-Lefert, P, Rubin, E M, Darling, A E, Rattei, T & McHardy, A C 2017, ' Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software ', Nature Methods, vol. 14, no. 11, pp. 1063-1071 . https://doi.org/10.1038/NMETH.4458
Nature methods, vol 14, iss 11
Nature methods
Methods for assembly, taxonomic profiling and binning are key to interpreting metagenome data, but a lack of consensus about benchmarking complicates performance assessment. The Critical Assessment of Metagenome Interpretation (CAMI) challenge has en
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d6edbef3576f41e42f08c76da345c095
https://hdl.handle.net/20.500.11850/206823
https://hdl.handle.net/20.500.11850/206823