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pro vyhledávání: '"Steijger, T"'
Autor:
Steijger, T, Abril, JF, Engström, PG, Kokocinski, F, Hubbard, TJ, Guigó, R, Harrow, J, Bertone, P
We evaluated 25 protocol variants of 14 independent computational methods for exon identification, transcript reconstruction and expression-level quantification from RNA-seq data. Our results show that most algorithms are able to identify discrete tr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ff8c236cc628ffb58895f549583d7356
Autor:
Engström, Pg, Steijger, T, Sipos, B, Grant, Gr, Kahles, A, Alioto, T, Behr, J, Bertone, P, Bohnert, R, Campagna, Davide, Davis, Ca, Dobin, A, Gingeras, Tr, Goldman, N, Guigó, R, Harrow, J, Hubbard, Tj, Jean, G, Kosarev, P, Li, S, Liu, J, Mason, Ce, Molodtsov, V, Ning, Z, Ponstingl, H, Prins, Jf, Rätsch, G, Ribeca, P, Seledtsov, I, Solovyev, V, Valle, Giorgio, Vitulo, Nicola, Wang, K, Wu, Td, Zeller, G, Rgasp, Consortium
Publikováno v:
Nature methods
Nature Methods
Nature Methods, Nature Publishing Group, 2013, epub ahead of print. ⟨10.1038/nmeth.2722⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Nature Methods
Nature Methods, Nature Publishing Group, 2013, epub ahead of print. ⟨10.1038/nmeth.2722⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
LINA-COMBI; International audience; : High-throughput RNA sequencing is an increasingly accessible method for studying gene structure and activity on a genome-wide scale. A critical step in RNA-seq data analysis is the alignment of partial transcript
Autor:
Steijger, T., Abril, J.F., Engström, P.G., Kokocinski, F., Akerman, M., Alioto, T., Ambrosini, G., Antonarakis, S.E., Behr, J., Bertone, P., Bohnert, R., Bucher, P., Cloonan, N., Derrien, T., Djebali, S., Du, J., Dudoit, S., Gerstein, M., Gingeras, T.R., Gonzalez, D., Grimmond, S.M., Guigó, R., Habegger, L., Harrow, J., Hubbard, T.J., Iseli, C., Jean, G., Kahles, A., Lagarde, J., Leng, J., Lefebvre, G., Lewis, S., Mortazavi, A., Niermann, P., Rätsch, G., Reymond, A., Ribeca, P., Richard, H., Rougemont, J., Rozowsky, J., Sammeth, M., Sboner, A., Schulz, M.H., Searle, S.M., Solorzano, N.D., Solovyev, V., Stanke, M., Stevenson, B.J., Stockinger, H., Valsesia, A., Weese, D., White, S., Wold, B.J., Wu, J., Wu, T.D., Zeller, G., Zerbino, D., Zhang, M.Q.
Publikováno v:
Nature Methods, vol. 10, no. 12, pp. 1177-1184
Nature methods, vol 10, iss 12
Nature Methods
Nature Methods, Nature Publishing Group, 2013, 10 (12), pp.1177-1184. ⟨10.1038/nmeth.2714⟩
Steijger, T; Abril, JF; Engström, PG; Kokocinski, F; Akerman, M; Alioto, T; et al.(2013). Assessment of transcript reconstruction methods for RNA-seq. Nature Methods, 10(12), 1177-1184. doi: 10.1038/nmeth.2714. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/7z46z3k7
Nature Methods, Nature Publishing Group, 2013, 10 (12), pp.1177-1184. 〈10.1038/nmeth.2714〉
Nature Methods, 2013, 10 (12), pp.1177-1184. ⟨10.1038/nmeth.2714⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Europe PubMed Central
Nature Methods, Vol. 10, No 12 (2013) pp. 1177-84
Nature methods, vol 10, iss 12
Nature Methods
Nature Methods, Nature Publishing Group, 2013, 10 (12), pp.1177-1184. ⟨10.1038/nmeth.2714⟩
Steijger, T; Abril, JF; Engström, PG; Kokocinski, F; Akerman, M; Alioto, T; et al.(2013). Assessment of transcript reconstruction methods for RNA-seq. Nature Methods, 10(12), 1177-1184. doi: 10.1038/nmeth.2714. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/7z46z3k7
Nature Methods, Nature Publishing Group, 2013, 10 (12), pp.1177-1184. 〈10.1038/nmeth.2714〉
Nature Methods, 2013, 10 (12), pp.1177-1184. ⟨10.1038/nmeth.2714⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Europe PubMed Central
Nature Methods, Vol. 10, No 12 (2013) pp. 1177-84
We evaluated 25 protocol variants of 14 independent computational methods for exon identification, transcript reconstruction and expression-level quantification from RNA-seq data. Our results show that most algorithms are able to identify discrete tr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dd88887c042781ec2035c82a3feee85f
https://serval.unil.ch/notice/serval:BIB_63C268AABFEF
https://serval.unil.ch/notice/serval:BIB_63C268AABFEF
Autor:
Gutzmann, T., Steijger, T.
Publikováno v:
2009 Ninth IEEE International Working Conference on Source Code Analysis & Manipulation; 2009, p121-122, 2p
Autor:
Steijger, Tamara
The introduction of Java 5.0 came along with an extension of the language syntax. Several new language features as generic types and enumeration types were added to the language specification. These features cause downward-incompatibilities, code wri
Externí odkaz:
http://urn.kb.se/resolve?urn=urn:nbn:se:vxu:diva-2421
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Autor:
Steijger T; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Abril JF; Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain., Engström PG; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Kokocinski F; Wellcome Trust Sanger Institute, Cambridge, UK., Hubbard TJ; Wellcome Trust Sanger Institute, Cambridge, UK., Guigó R; Center for Genomic Regulation, Barcelona, Spain.; Universitat Pompeu Fabra, Barcelona, Spain., Harrow J; Wellcome Trust Sanger Institute, Cambridge, UK., Bertone P; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.; Genome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.; Developmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.; Wellcome Trust - Medical Research Council Cambridge Stem Cell Institute, University of Cambridge, Cambridge, UK.
Publikováno v:
Nature methods [Nat Methods] 2013 Dec; Vol. 10 (12), pp. 1177-84. Date of Electronic Publication: 2013 Nov 03.