Zobrazeno 1 - 10
of 641
pro vyhledávání: '"Steijger, T"'
Autor:
Steijger, T, Abril, JF, Engström, PG, Kokocinski, F, Hubbard, TJ, Guigó, R, Harrow, J, Bertone, P
We evaluated 25 protocol variants of 14 independent computational methods for exon identification, transcript reconstruction and expression-level quantification from RNA-seq data. Our results show that most algorithms are able to identify discrete tr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ff8c236cc628ffb58895f549583d7356
Autor:
Engström, Pg, Steijger, T, Sipos, B, Grant, Gr, Kahles, A, Alioto, T, Behr, J, Bertone, P, Bohnert, R, Campagna, Davide, Davis, Ca, Dobin, A, Gingeras, Tr, Goldman, N, Guigó, R, Harrow, J, Hubbard, Tj, Jean, G, Kosarev, P, Li, S, Liu, J, Mason, Ce, Molodtsov, V, Ning, Z, Ponstingl, H, Prins, Jf, Rätsch, G, Ribeca, P, Seledtsov, I, Solovyev, V, Valle, Giorgio, Vitulo, Nicola, Wang, K, Wu, Td, Zeller, G, Rgasp, Consortium
Publikováno v:
Nature methods
Nature Methods
Nature Methods, Nature Publishing Group, 2013, epub ahead of print. ⟨10.1038/nmeth.2722⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Nature Methods
Nature Methods, Nature Publishing Group, 2013, epub ahead of print. ⟨10.1038/nmeth.2722⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
LINA-COMBI; International audience; : High-throughput RNA sequencing is an increasingly accessible method for studying gene structure and activity on a genome-wide scale. A critical step in RNA-seq data analysis is the alignment of partial transcript
Autor:
Su, Xinglei1,2,3 (AUTHOR), Zheng, Qiangting4 (AUTHOR), Xiu, Xuehao2 (AUTHOR), Zhao, Qiong5 (AUTHOR), Wang, Yudong6 (AUTHOR) wangyudong@shsmu.edu.cn, Han, Da3 (AUTHOR) dahan@sjtu.edu.cn, Song, Ping2 (AUTHOR) songpingsjtu@sjtu.edu.cn
Publikováno v:
Med-X. 9/29/2024, Vol. 2 Issue 1, p1-23. 23p.
Autor:
Steijger, T., Abril, J.F., Engström, P.G., Kokocinski, F., Akerman, M., Alioto, T., Ambrosini, G., Antonarakis, S.E., Behr, J., Bertone, P., Bohnert, R., Bucher, P., Cloonan, N., Derrien, T., Djebali, S., Du, J., Dudoit, S., Gerstein, M., Gingeras, T.R., Gonzalez, D., Grimmond, S.M., Guigó, R., Habegger, L., Harrow, J., Hubbard, T.J., Iseli, C., Jean, G., Kahles, A., Lagarde, J., Leng, J., Lefebvre, G., Lewis, S., Mortazavi, A., Niermann, P., Rätsch, G., Reymond, A., Ribeca, P., Richard, H., Rougemont, J., Rozowsky, J., Sammeth, M., Sboner, A., Schulz, M.H., Searle, S.M., Solorzano, N.D., Solovyev, V., Stanke, M., Stevenson, B.J., Stockinger, H., Valsesia, A., Weese, D., White, S., Wold, B.J., Wu, J., Wu, T.D., Zeller, G., Zerbino, D., Zhang, M.Q.
Publikováno v:
Nature Methods, vol. 10, no. 12, pp. 1177-1184
Nature methods, vol 10, iss 12
Nature Methods
Nature Methods, Nature Publishing Group, 2013, 10 (12), pp.1177-1184. ⟨10.1038/nmeth.2714⟩
Steijger, T; Abril, JF; Engström, PG; Kokocinski, F; Akerman, M; Alioto, T; et al.(2013). Assessment of transcript reconstruction methods for RNA-seq. Nature Methods, 10(12), 1177-1184. doi: 10.1038/nmeth.2714. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/7z46z3k7
Nature Methods, Nature Publishing Group, 2013, 10 (12), pp.1177-1184. 〈10.1038/nmeth.2714〉
Nature Methods, 2013, 10 (12), pp.1177-1184. ⟨10.1038/nmeth.2714⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Europe PubMed Central
Nature Methods, Vol. 10, No 12 (2013) pp. 1177-84
Nature methods, vol 10, iss 12
Nature Methods
Nature Methods, Nature Publishing Group, 2013, 10 (12), pp.1177-1184. ⟨10.1038/nmeth.2714⟩
Steijger, T; Abril, JF; Engström, PG; Kokocinski, F; Akerman, M; Alioto, T; et al.(2013). Assessment of transcript reconstruction methods for RNA-seq. Nature Methods, 10(12), 1177-1184. doi: 10.1038/nmeth.2714. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/7z46z3k7
Nature Methods, Nature Publishing Group, 2013, 10 (12), pp.1177-1184. 〈10.1038/nmeth.2714〉
Nature Methods, 2013, 10 (12), pp.1177-1184. ⟨10.1038/nmeth.2714⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Europe PubMed Central
Nature Methods, Vol. 10, No 12 (2013) pp. 1177-84
We evaluated 25 protocol variants of 14 independent computational methods for exon identification, transcript reconstruction and expression-level quantification from RNA-seq data. Our results show that most algorithms are able to identify discrete tr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dd88887c042781ec2035c82a3feee85f
https://serval.unil.ch/notice/serval:BIB_63C268AABFEF
https://serval.unil.ch/notice/serval:BIB_63C268AABFEF
Autor:
Jia, Dong-Dong1 (AUTHOR), Li, Tao1 (AUTHOR) litaozhaw@163.com
Publikováno v:
Scientific Reports. 7/18/2024, Vol. 14 Issue 1, p1-11. 11p.
Autor:
de Brito, Márcio Wilson Dias1,2 (AUTHOR), de Carvalho, Stephanie Serafim3 (AUTHOR), Mota, Maria Beatriz dos Santos2,4 (AUTHOR), Mesquita, Rafael Dias1,4,5 (AUTHOR) rdmesquita@iq.ufrj.br
Publikováno v:
BMC Genomics. 7/16/2024, Vol. 25 Issue 1, p1-12. 12p.
Autor:
Digby, Barry1 (AUTHOR) b.digby1@universityofgalway.ie, Finn, Stephen2 (AUTHOR), Ó Broin, Pilib1 (AUTHOR)
Publikováno v:
BMC Genomics. 5/28/2024, Vol. 25 Issue 1, p1-27. 27p.
Autor:
Hitzemann, Robert1,2,3 hitzeman@ohsu.edu, Gao, Lina2,4, Fei, Suzanne S.2,4, Ray, Karina4, Vigh-Conrad, Katinka A.5, Phillips, Tamara J.1,2,3, Searles, Robert2,6, Cervera-Juanes, Rita P.7, Khadka, Rupak7, Carlson, Timothy L.7, Gonzales, Steven W.7, Newman, Natali7, Grant, Kathleen A.1,2,7 grantka@ohsu.edu
Publikováno v:
Advances in Drug & Alcohol Research. 2024, p01-14. 14p.
Autor:
Chen, Genghua1,2,3 (AUTHOR), Chen, Jiahui1,2,3 (AUTHOR), Qi, Lin1,2,3 (AUTHOR), Yin, Yunqian1,2,3 (AUTHOR), Lin, Zetong1,2,3 (AUTHOR), Wen, Huaqiang1,2,3 (AUTHOR), Zhang, Shuai1,2,3 (AUTHOR), Xiao, Chuanyun4 (AUTHOR), Bello, Semiu Folaniyi1,2,3 (AUTHOR), Zhang, Xiquan1,2,3 (AUTHOR), Nie, Qinghua1,2,3 (AUTHOR) nqinghua@scau.edu.cn, Luo, Wen1,2,3 (AUTHOR) luowen729@scau.edu.cn
Publikováno v:
Cell Proliferation. Feb2024, Vol. 57 Issue 2, p1-26. 26p.
Autor:
Wijeratne, Saranga1 (AUTHOR), Gonzalez, Maria E. Hernandez1 (AUTHOR), Roach, Kelli1 (AUTHOR), Miller, Katherine E.1,2 (AUTHOR), Schieffer, Kathleen M.1,2,3 (AUTHOR), Fitch, James R.1 (AUTHOR), Leonard, Jeffrey4,5 (AUTHOR), White, Peter1,2 (AUTHOR), Kelly, Benjamin J.1 (AUTHOR), Cottrell, Catherine E.1,2,3 (AUTHOR), Mardis, Elaine R.1,2,5 (AUTHOR), Wilson, Richard K.1,2 (AUTHOR), Miller, Anthony R.1 (AUTHOR) Anthony.Miller@nationwidechildrens.org
Publikováno v:
BMC Genomics. 1/29/2024, Vol. 25 Issue 1, p1-19. 19p.