Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Stefanie Kaufmann"'
Autor:
Stefanie Kaufmann, Christiane Fuchs, Mariya Gonik, Ekaterina E Khrameeva, Andrey A Mironov, Dmitrij Frishman
Publikováno v:
PLoS ONE, Vol 10, Iss 5, p e0126125 (2015)
The recent advent of conformation capture techniques has provided unprecedented insights into the spatial organization of chromatin. We present a large-scale investigation of the inter-chromosomal segment and gene contact networks in embryonic stem c
Externí odkaz:
https://doaj.org/article/cb4c9cede7804c8483ad0e2216fbaec7
Autor:
Stefanie Kaufmann, Dmitrij Frishman
Publikováno v:
PLoS ONE, Vol 9, Iss 11, p e112341 (2014)
High-quality mapping of genomic regions and genes between two organisms is an indispensable prerequisite for evolutionary analyses and comparative genomics. Existing approaches to this problem focus on either delineating orthologs or finding extended
Externí odkaz:
https://doaj.org/article/bcfc7715a48c40f7ad7d4f0e56bfbe83
Publikováno v:
FEBS Journal. 279:2192-2200
Many fields of science and industry depend on efficient production of active protein using heterologous expression in Escherichia coli. The solubility of proteins upon expression is dependent on their amino acid sequence. Prediction of solubility fro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7cebd6538046232ea62c0db46c3324a8
https://doi.org/10.1111/j.1742-4658.2012.08603.x
https://doi.org/10.1111/j.1742-4658.2012.08603.x
Autor:
Lukas Windhager, Georg Malterer, Anne L’Hernault, Ralf Zimmer, Stefanie Kaufmann, Caroline C. Friedel, Zsolt Ruzsics, Kaspar Burger, Philip Rosenstiel, Dirk Eick, Thomas Bonfert, Stefan Schreiber, Lars Dölken, Markus Schilhabel, Stefan Krebs
Publikováno v:
Genome Research. 22:2031-2042
RNA synthesis and decay rates determine the steady-state levels of cellular RNAs. Metabolic tagging of newly transcribed RNA by 4-thiouridine (4sU) can reveal the relative contributions of RNA synthesis and decay rates. The kinetics of RNA processing
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::168d0a62a2624fa48c93c5fc804a706e
https://doi.org/10.1101/gr.131847.111
https://doi.org/10.1101/gr.131847.111
Autor:
Esmeralda Vicedo, Christian Schaefer, Stefanie Kaufmann, Rebecca Kassner, Tatjana Braun, Thomas A. Hopf, Burkhard Rost, Manfred Roos, Cedric Landerer, Ariane Boehm, Denis Krompass, Florian Auer, Michael Kiening, Yannick Mahlich, Peter Hönigschmid, Maximilian Hecht, Mark Heron, Dominik Achten, Stefan Seemayer, Tobias Hamp
Publikováno v:
BMC Bioinformatics
Background Any method that de novo predicts protein function should do better than random. More challenging, it also ought to outperform simple homology-based inference. Methods Here, we describe a few methods that predict protein function exclusivel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::704348e1c8d350c9492efacc3c489c1f
https://doi.org/10.1186/1471-2105-14-s3-s7
https://doi.org/10.1186/1471-2105-14-s3-s7
Autor:
Christine A. Orengo, Liang Lan, Daniel W. A. Buchan, Jeffrey M. Yunes, Alberto Paccanaro, Yannick Mahlich, Enrico Lavezzo, Patricia C. Babbitt, Domenico Cozzetto, Cedric Landerer, Jari Björne, Esmeralda Vicedo, Robert Rentzsch, Rajendra Joshi, Hagit Shatkay, Nives Škunca, Zheng Wang, Tal Ronnen Oron, Ingolf Sommer, Amos Marc Bairoch, Mark Heron, Panče Panov, Daisuke Kihara, Wyatt T. Clark, Michael J.E. Sternberg, Steven E. Brenner, Sašo Džeroski, Burkhard Rost, Christian Schaefer, Karin Verspoor, Harshal Inamdar, Tapio Salakoski, Meghana Chitale, Alfonso E. Romero, Julian Gough, Fran Supek, Olivier Lichtarge, Dominik Achten, Serkan Erdin, Michael Kiening, Petri Törönen, Avik Datta, Iddo Friedberg, Thomas A. Hopf, Liisa Holm, Rita Casadio, Asa Ben-Hur, Tatjana Braun, Sean D. Mooney, Marco Falda, Kiley Graim, Michal Linial, Alexandra M. Schnoes, Christopher S. Funk, Rebecca Kaßner, Patrik Koskinen, Nemanja Djuric, Paolo Fontana, Predrag Radivojac, Tobias Wittkop, Kevin Bryson, Maximilian Hecht, Susanna Repo, Haixuan Yang, Artem Sokolov, Prajwal Bhat, Tobias Hamp, Jianlin Cheng, Mark N. Wass, Gaurav Pandey, Michael L Souza, Damiano Piovesan, Ameet Talwalkar, Stefan Seemayer, Eric Venner, Sunitha K Manjari, Fanny Gatzmann, Aalt D. J. van Dijk, Manfred Roos, Tomislav Šmuc, David T. Jones, Peter Hönigschmid, Ariane Boehm, Florian Auer, Jussi Nokso-Koivisto, Stefano Toppo, Slobodan Vucetic, Denis Krompass, Qingtian Gong, Cajo J. F. ter Braak, Andrew Wong, Barbara Di Camillo, Yiannis A. I. Kourmpetis, Andreas Martin Lisewski, Matko Bošnjak, Bhakti Limaye, Weidong Tian, Yuhong Guo, Xinran Dong, Hai Fang, Yuanpeng Zhou, Stefanie Kaufmann
Publikováno v:
Nature Methods
Nature methods
Nature Methods : techniques for life scientists and chemists 10 (2013)
Nature Methods : techniques for life scientists and chemists, 10, 221-227
Nature Methods, Vol. 10, No 3 (2013) pp. 221-7
Nature methods
Nature Methods : techniques for life scientists and chemists 10 (2013)
Nature Methods : techniques for life scientists and chemists, 10, 221-227
Nature Methods, Vol. 10, No 3 (2013) pp. 221-7
Automated annotation of protein function is challenging. As the number of sequenced genomes rapidly grows, the overwhelming majority of protein products can only be annotated computationally. If computational predictions are to be relied upon, it is
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c19e166af084819ee544097527791f10
http://hdl.handle.net/10449/22010
http://hdl.handle.net/10449/22010
Publikováno v:
Bioinformatics (Oxford, England). 26(9)
Summary: Recent improvements in experimental technologies now allow measurements of de novo transcription and/or RNA decay at whole transcriptome level and determination of precise transcript half-lives. Such transcript half-lives provide important i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9f0f8bc30db0b0c0c6e63ef8e2aa0782
https://pubmed.ncbi.nlm.nih.gov/20299326
https://pubmed.ncbi.nlm.nih.gov/20299326
Autor:
Hans Vetter, Thomas Mengden, Silke Ewald, Stefanie Kaufmann, Sakir Uen, Johannes vor dem Esche
Publikováno v:
Blood pressure monitoring. 9(6)
Objective To investigate the feasibility of blood pressure (BP) telemonitoring in previous uncontrolled hypertensives treated with olmesartan medoxomil in a clinical practice setting. Methods Patients (n=53) with untreated, uncontrolled or insufficie
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::79bbc143049887b4a001062953727c0f
https://pubmed.ncbi.nlm.nih.gov/15564988
https://pubmed.ncbi.nlm.nih.gov/15564988
Publikováno v:
Journal of Hypertension. 22:S26
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::25048d06113d2c6d63b9d8cde6afdad3
https://doi.org/10.1097/00004872-200406002-00080
https://doi.org/10.1097/00004872-200406002-00080
Publikováno v:
American Journal of Hypertension. 17:S223
P-519 The indicated level of significance refers in each case to day 1. Telemonitoring of BP is feasible in pharmacological studies and allows unbiased evaluation of the extent and onset of action of antihypertensive drugs. Further analysis of all BP
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::197164152480c7668f4ac1592772b18d
https://doi.org/10.1016/j.amjhyper.2004.03.593
https://doi.org/10.1016/j.amjhyper.2004.03.593