Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Stefan Lutzmayer"'
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-21 (2022)
Abstract We developed Bookend, a package for transcript assembly that incorporates data from different RNA-seq techniques, with a focus on identifying and utilizing RNA 5′ and 3′ ends. We demonstrate that correct identification of transcript star
Externí odkaz:
https://doaj.org/article/f8ce5169a3d8401b88a9fcba1ff28e08
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-3 (2022)
Externí odkaz:
https://doaj.org/article/7499c28f0f5041a5960d65d4d16a9b98
Autor:
Ranjith K. Papareddy, Katalin Páldi, Subramanian Paulraj, Ping Kao, Stefan Lutzmayer, Michael D. Nodine
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-24 (2020)
Abstract Background Eukaryotic genomes are partitioned into euchromatic and heterochromatic domains to regulate gene expression and other fundamental cellular processes. However, chromatin is dynamic during growth and development and must be properly
Externí odkaz:
https://doaj.org/article/8ab754b2f58a4c5a97b7f54b59b8fb1c
Publikováno v:
Scientific Reports, Vol 7, Iss 1, Pp 1-6 (2017)
Abstract Normalization of high-throughput small RNA sequencing (sRNA-Seq) data is required to compare sRNA levels across different samples. Commonly used relative normalization approaches can cause erroneous conclusions due to fluctuating small RNA p
Externí odkaz:
https://doaj.org/article/17fc805a814547d18b623e1269983cae
Autor:
Fernando A. Rabanal, Terezie Mandáková, Luz M. Soto-Jiménez, Robert Greenhalgh, David L. Parrott, Stefan Lutzmayer, Joshua G. Steffen, Viktoria Nizhynska, Richard Mott, Martin A. Lysak, Richard M. Clark, Magnus Nordborg
Publikováno v:
Genome Biology, Vol 18, Iss 1, Pp 1-15 (2017)
Abstract Background Ribosomal RNA (rRNA) accounts for the majority of the RNA in eukaryotic cells, and is encoded by hundreds to thousands of nearly identical gene copies, only a subset of which are active at any given time. In Arabidopsis thaliana,
Externí odkaz:
https://doaj.org/article/cf2ac61c586d4468906a152697e1f51f
Autor:
Snehlata Kumari, Younes Redouane, Jaime Lopez-Mosqueda, Ryoko Shiraishi, Malgorzata Romanowska, Stefan Lutzmayer, Jan Kuiper, Conception Martinez, Ivan Dikic, Manolis Pasparakis, Fumiyo Ikeda
Publikováno v:
eLife, Vol 3 (2014)
Linear Ubiquitin chain Assembly Complex (LUBAC) is an E3 ligase complex that generates linear ubiquitin chains and is important for tumour necrosis factor (TNF) signaling activation. Mice lacking Sharpin, a critical subunit of LUBAC, spontaneously de
Externí odkaz:
https://doaj.org/article/5400ea6fdffd423ba947794f3f1e0aa7
Accurate annotation of transcript isoforms is crucial to understand gene functions, but automated methods for reconstructing full-length transcripts from RNA sequencing (RNA-seq) data remain imprecise. We developed Bookend, a software package for tra
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::32b0267c7893c12a754194b6bec6f1cd
https://doi.org/10.1101/2022.01.12.476004
https://doi.org/10.1101/2022.01.12.476004
Publikováno v:
Scientific Reports, Vol 7, Iss 1, Pp 1-6 (2017)
Scientific Reports
Scientific Reports
Normalization of high-throughput small RNA sequencing (sRNA-Seq) data is required to compare sRNA levels across different samples. Commonly used relative normalization approaches can cause erroneous conclusions due to fluctuating small RNA population
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::09f277066258868b0f4785cefd281113
https://doaj.org/article/17fc805a814547d18b623e1269983cae
https://doaj.org/article/17fc805a814547d18b623e1269983cae
Autor:
Richard M. Clark, Richard Mott, Viktoria Nizhynska, Magnus Nordborg, Robert Greenhalgh, Joshua G. Steffen, Terezie Mandáková, Luz Mayela Soto-Jiménez, David Lee Parrott, Martin A. Lysak, Stefan Lutzmayer, Fernando A. Rabanal
Publikováno v:
Genome Biology
Genome Biology, Vol 18, Iss 1, Pp 1-15 (2017)
Genome Biology, Vol 18, Iss 1, Pp 1-15 (2017)
Background Ribosomal RNA (rRNA) accounts for the majority of the RNA in eukaryotic cells, and is encoded by hundreds to thousands of nearly identical gene copies, only a subset of which are active at any given time. In Arabidopsis thaliana, 45S rRNA
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::43228c6d762024d26b9f1efd9d080b89
https://doi.org/10.1186/s13059-017-1209-z
https://doi.org/10.1186/s13059-017-1209-z
Autor:
Jaime Lopez-Mosqueda, Snehlata Kumari, Ivan Dikic, Malgorzata Romanowska, Younes Redouane, Ryoko Shiraishi, Fumiyo Ikeda, Conception Martinez, Jan Kuiper, Stefan Lutzmayer, Manolis Pasparakis
Publikováno v:
eLife
eLife, Vol 3 (2014)
eLife, Vol 3 (2014)
Linear Ubiquitin chain Assembly Complex (LUBAC) is an E3 ligase complex that generates linear ubiquitin chains and is important for tumour necrosis factor (TNF) signaling activation. Mice lacking Sharpin, a critical subunit of LUBAC, spontaneously de
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::689fa216a74f6588dc71894f6865990f
http://publikationen.ub.uni-frankfurt.de/frontdoor/index/index/docId/37797
http://publikationen.ub.uni-frankfurt.de/frontdoor/index/index/docId/37797