Zobrazeno 1 - 10
of 57
pro vyhledávání: '"Stefan L Ameres"'
Publikováno v:
Genome Biology, Vol 25, Iss 1, Pp 1-19 (2024)
Abstract Nucleotide conversion RNA sequencing techniques interrogate chemical RNA modifications in cellular transcripts, resulting in mismatch-containing reads. Biases in mapping the resulting reads to reference genomes remain poorly understood. We p
Externí odkaz:
https://doaj.org/article/82b79117ed5b4c5591dea76d334124af
Autor:
Pooja Bhat, Luis E. Cabrera-Quio, Veronika A. Herzog, Nina Fasching, Andrea Pauli, Stefan L. Ameres
Publikováno v:
Cell Reports, Vol 42, Iss 2, Pp 112070- (2023)
Summary: The maternal-to-zygotic transition (MZT) is a key developmental process in metazoan embryos that involves the activation of zygotic transcription (ZGA) and degradation of maternal transcripts. We employed metabolic mRNA sequencing (SLAMseq)
Externí odkaz:
https://doaj.org/article/ec36637bfce24c3eb1f076ea8b1bdba9
Autor:
Tobias Neumann, Veronika A. Herzog, Matthias Muhar, Arndt von Haeseler, Johannes Zuber, Stefan L. Ameres, Philipp Rescheneder
Publikováno v:
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-16 (2019)
Abstract Background Methods to read out naturally occurring or experimentally introduced nucleic acid modifications are emerging as powerful tools to study dynamic cellular processes. The recovery, quantification and interpretation of such events in
Externí odkaz:
https://doaj.org/article/39292a6c04f248eeb835ced54223a359
Autor:
Michelle Huth, Laura Santini, Elena Galimberti, Julia Ramesmayer, Fabian Titz-Teixeira, Robert Sehlke, Michael Oberhuemer, Sarah Stummer, Veronika Herzog, Marius Garmhausen, Merrit Romeike, Anastasia Chugunova, Friederike Leesch, Laurenz Holcik, Klara Weipoltshammer, Andreas Lackner, Christian Schoefer, Arndt von Haeseler, Christa Buecker, Andrea Pauli, Stefan L. Ameres, Austin Smith, Andreas Beyer, Martin Leeb
Publikováno v:
Genes & Development. 36:348-367
Cell fate transitions depend on balanced rewiring of transcription and translation programs to mediate ordered developmental progression. Components of the nonsense-mediated mRNA decay (NMD) pathway have been implicated in regulating embryonic stem c
Autor:
Vahid Asimi, Abhishek Sampath Kumar, Henri Niskanen, Christina Riemenschneider, Sara Hetzel, Julian Naderi, Nina Fasching, Niko Popitsch, Manyu Du, Helene Kretzmer, Zachary D. Smith, Raha Weigert, Maria Walther, Sainath Mamde, David Meierhofer, Lars Wittler, René Buschow, Bernd Timmermann, Ibrahim I. Cisse, Stefan L. Ameres, Alexander Meissner, Denes Hnisz
Publikováno v:
Nature Genetics
Most endogenous retroviruses (ERVs) in mammals are incapable of retrotransposition; therefore, why ERV derepression is associated with lethality during early development has been a mystery. Here, we report that rapid and selective degradation of the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4aacb99499b9548036da3facfd0de18a
https://hdl.handle.net/21.11116/0000-000D-15FB-121.11116/0000-000D-15F9-3
https://hdl.handle.net/21.11116/0000-000D-15FB-121.11116/0000-000D-15F9-3
Autor:
Pooja Bhat, Luis E. Cabrera-Quio, Veronika A. Herzog, Nina Fasching, Andrea Pauli, Stefan L. Ameres
Publikováno v:
bioRxiv
The maternal-to-zygotic transition (MZT) is a key developmental process in metazoan embryos that involves the activation of zygotic transcription (ZGA) and degradation of maternal transcripts. We employed metabolic mRNA sequencing (SLAMseq) to deconv
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9959a5e575ee111b7f579ced53fd6d95
https://doi.org/10.1101/2022.06.01.494399
https://doi.org/10.1101/2022.06.01.494399
Autor:
Jan-Michael Peters, Wen Tang, Christoph C. H. Langer, Stefan L. Ameres, Catherina Gasser, Gregor Jessberger, Eva Neuner, Daniel W. Gerlich, Ronald Micura, Zsuzsanna Takacs, Anton Goloborodko, Charlie T. Beales, Michael Mitter
Publikováno v:
Nature
The three-dimensional organization of the genome supports regulated gene expression, recombination, DNA repair, and chromosome segregation during mitosis. Chromosome conformation capture (Hi-C)1,2 analysis has revealed a complex genomic landscape of
Publikováno v:
Methods in Molecular Biology ISBN: 9781071618509
Gene expression is controlled at multiple levels, including RNA transcription and turnover. But determining the relative contributions of RNA biogenesis and decay to the steady-state abundance of cellular transcripts remains challenging because conve
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e71275fc565bede13b1b840cb5753d63
https://doi.org/10.1007/978-1-0716-1851-6_17
https://doi.org/10.1007/978-1-0716-1851-6_17
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2404
Gene expression is controlled at multiple levels, including RNA transcription and turnover. But determining the relative contributions of RNA biogenesis and decay to the steady-state abundance of cellular transcripts remains challenging because conve
Autor:
Alexander Meissner, Henri Niskanen, Zachary J. Smith, Helene Kretzmer, Denes Hnisz, Maria Walther, Abhishek Sampath Kumar, Bernd Timmermann, Lars Wittler, Christina Riemenschneider, René Buschow, Stefan L. Ameres, David Meierhofer, Nina Fasching, Sara Hetzel, Niko Popitsch, Julian Naderi, Vahid Asimi
Endogenous retroviruses (ERVs) comprise ~10% of mammalian genomes, and ERVs are repressed by multiple cellular mechanisms including heterochromatin, DNA methylation, and methylation of their RNA transcripts 1-13. Although the vast majority of ERVs in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c5291c5129fa0f10185f3e257e331903
https://doi.org/10.21203/rs.3.rs-802409/v1
https://doi.org/10.21203/rs.3.rs-802409/v1