Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

Autor: Kovaleva Galina, Kazakov Alexey E, Gerasimova Anna V, Ravcheev Dmitry A, Kazanov Marat D, Li Xiaoqing, Rodionova Irina A, Stavrovskaya Elena D, Novichkov Pavel S, Rodionov Dmitry A, Permina Elizabeth A, Laikova Olga N, Overbeek Ross, Romine Margaret F, Fredrickson James K, Arkin Adam P, Dubchak Inna, Osterman Andrei L, Gelfand Mikhail S

Publikováno v: BMC Genomics, Vol 12, Iss Suppl 1, p S3 (2011)

Abstract Background Genome-scale prediction of gene regulation and reconstruction of transcriptional regulatory networks in bacteria is one of the critical tasks of modern genomics. The Shewanella genus is comprised of metabolically versatile gamma-p

Externí odkaz: https://doaj.org/article/2d79557957be4c53870c383209194478

Two Genetic Algorithms for Identification of Regulatory Signals.

Autor: Stavrovskaya, Elena D.¹ esta191@fromru.com, Mironov, Andrey A.^1,2

Publikováno v: In Silico Biology. 2003, Vol. 3 Issue 1/2, p49. 8p.

Web-based Tool for Fast and Accurate de novo Inference of Regulons in the Sets of Closely Related Bacterial Genomes

Autor: Novichkov, Pavel S., Stavrovskaya, Elena D., Gelfand, Mikhail s., Mironov, Andrey A., Dubchak, Inna, Rodionov, Dmitry A.

Publikováno v: Novichkov, Pavel S.; Stavrovskaya, Elena D.; Gelfand, Mikhail s.; Mironov, Andrey A.; Dubchak, Inna; & Rodionov, Dmitry A.(2009). Web-based Tool for Fast and Accurate de novo Inference of Regulons in the Sets of Closely Related Bacterial Genomes. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/0ch5q4ph

One of the major challenges for the bioinformatics community in view of constantly growing number of complete genomes is providing effective tools to enable high-quality reconstruction of transcriptional regulatory networks (TRN). Definition of a par

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::f261b211d5eb6047cee6f090bcfe802d
http://www.escholarship.org/uc/item/0ch5q4ph

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