Polysaccharide sulfotransferases: the identification of putative sequences and respective functional characterisation.

Autor: Mistry R; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, U.K., Byrne DP; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, U.K., Starns D; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, U.K., Barsukov IL; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, U.K., Yates EA; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, U.K., Fernig DG; Department of Biochemistry, Cell and Systems Biology, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, U.K.

Publikováno v: Essays in biochemistry [Essays Biochem] 2024 May 07. Date of Electronic Publication: 2024 May 07.

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023.

Autor: Alvarez-Jarreta J; European Bioinformatics Institute, Hinxton CB10 1SD, UK., Amos B; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Aurrecoechea C; University of Georgia, Athens, GA 30602, USA., Bah S; School of Infection and Immunity, University of Glasgow, Glasgow, UK., Barba M; European Bioinformatics Institute, Hinxton CB10 1SD, UK., Barreto A; University of Pennsylvania, Philadelphia, PA 19104, USA., Basenko EY; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Belnap R; University of Georgia, Athens, GA 30602, USA., Blevins A; University of Pennsylvania School of Veterinary Medicine, Philadelphia, PA 19104, USA., Böhme U; University of Georgia, Athens, GA 30602, USA., Brestelli J; University of Pennsylvania, Philadelphia, PA 19104, USA., Brown S; University of Pennsylvania, Philadelphia, PA 19104, USA., Callan D; University of Pennsylvania, Philadelphia, PA 19104, USA., Campbell LI; European Bioinformatics Institute, Hinxton CB10 1SD, UK., Christophides GK; Imperial College London, South Kensington, London SW7 2BU, UK., Crouch K; School of Infection and Immunity, University of Glasgow, Glasgow, UK., Davison HR; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., DeBarry JD; University of Georgia, Athens, GA 30602, USA., Demko R; University of Pennsylvania, Philadelphia, PA 19104, USA., Doherty R; University of Pennsylvania, Philadelphia, PA 19104, USA., Duan Y; University of Pennsylvania, Philadelphia, PA 19104, USA., Dundore W; University of Georgia, Athens, GA 30602, USA., Dyer S; European Bioinformatics Institute, Hinxton CB10 1SD, UK., Falke D; University of Georgia, Athens, GA 30602, USA., Fischer S; University of Pennsylvania, Philadelphia, PA 19104, USA., Gajria B; University of Pennsylvania, Philadelphia, PA 19104, USA., Galdi D; University of Pennsylvania, Philadelphia, PA 19104, USA., Giraldo-Calderón GI; University of Notre Dame, Notre Dame, IN 46556, USA., Harb OS; University of Pennsylvania, Philadelphia, PA 19104, USA., Harper E; University of Pennsylvania, Philadelphia, PA 19104, USA., Helb D; University of Pennsylvania, Philadelphia, PA 19104, USA., Howington C; University of Notre Dame, Notre Dame, IN 46556, USA., Hu S; University of Pennsylvania, Philadelphia, PA 19104, USA., Humphrey J; University of Georgia, Athens, GA 30602, USA., Iodice J; University of Pennsylvania, Philadelphia, PA 19104, USA., Jones A; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Judkins J; University of Pennsylvania, Philadelphia, PA 19104, USA., Kelly SA; Imperial College London, South Kensington, London SW7 2BU, UK., Kissinger JC; University of Georgia, Athens, GA 30602, USA., Kittur N; University of Georgia, Athens, GA 30602, USA., Kwon DK; University of Notre Dame, Notre Dame, IN 46556, USA., Lamoureux K; University of Georgia, Athens, GA 30602, USA., Li W; University of Pennsylvania, Philadelphia, PA 19104, USA., Lodha D; European Bioinformatics Institute, Hinxton CB10 1SD, UK., MacCallum RM; Imperial College London, South Kensington, London SW7 2BU, UK., Maslen G; Imperial College London, South Kensington, London SW7 2BU, UK., McDowell MA; University of Notre Dame, Notre Dame, IN 46556, USA., Myers J; University of Pennsylvania, Philadelphia, PA 19104, USA., Nural MV; University of Georgia, Athens, GA 30602, USA., Roos DS; University of Pennsylvania, Philadelphia, PA 19104, USA., Rund SSC; University of Notre Dame, Notre Dame, IN 46556, USA., Shanmugasundram A; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.; Genomics England Limited, London E14 5AB, UK., Sitnik V; European Bioinformatics Institute, Hinxton CB10 1SD, UK., Spruill D; University of Georgia, Athens, GA 30602, USA., Starns D; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Tomko SS; University of Pennsylvania, Philadelphia, PA 19104, USA., Wang H; University of Georgia, Athens, GA 30602, USA., Warrenfeltz S; University of Georgia, Athens, GA 30602, USA., Wieck R; University of Notre Dame, Notre Dame, IN 46556, USA., Wilkinson PA; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Zheng J; University of Pennsylvania, Philadelphia, PA 19104, USA.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2024 Jan 05; Vol. 52 (D1), pp. D808-D816.

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.

Autor: Amos B; Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Aurrecoechea C; Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA., Barba M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Barreto A; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA., Basenko EY; Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Bażant W; Wellcome Centre for Integrative Parasitology, University of Glasgow, Glasgow G12 8TA, UK., Belnap R; Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA., Blevins AS; Department of Pathology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA., Böhme U; Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Brestelli J; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA., Brunk BP; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Caddick M; Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Callan D; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA., Campbell L; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Christensen MB; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Christophides GK; Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, UK., Crouch K; Wellcome Centre for Integrative Parasitology, University of Glasgow, Glasgow G12 8TA, UK., Davis K; Center for Research Computing, University of Notre Dame, Notre Dame, IN 46556, USA., DeBarry J; Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA., Doherty R; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Duan Y; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Dunn M; Center for Research Computing, University of Notre Dame, Notre Dame, IN 46556, USA., Falke D; Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA., Fisher S; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA., Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Fox B; Center for Research Computing, University of Notre Dame, Notre Dame, IN 46556, USA., Gajria B; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Giraldo-Calderón GI; Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA.; Departamento de Ciencias Biológicas y Departamento de Ciencias Básicas Médicas, Universidad Icesi, Calle 18 No. 122-135, Cali, Colombia., Harb OS; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Harper E; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Hertz-Fowler C; Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Hickman MJ; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Howington C; Center for Research Computing, University of Notre Dame, Notre Dame, IN 46556, USA., Hu S; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Humphrey J; Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA., Iodice J; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA., Jones A; Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Judkins J; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Kelly SA; Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, UK., Kissinger JC; Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA.; Department of Genetics, University of Georgia, Athens, GA 30602, USA.; Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA., Kwon DK; Department of Civil & Environmental Engineering & Earth Sciences, University of Notre Dame, Notre Dame, IN 46556, USA., Lamoureux K; Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA., Lawson D; Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, UK., Li W; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Lies K; Center for Research Computing, University of Notre Dame, Notre Dame, IN 46556, USA., Lodha D; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Long J; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., MacCallum RM; Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, UK., Maslen G; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., McDowell MA; Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA., Nabrzyski J; Center for Research Computing, University of Notre Dame, Notre Dame, IN 46556, USA., Roos DS; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Rund SSC; Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA., Schulman SW; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Shanmugasundram A; Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Sitnik V; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK., Spruill D; Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA., Starns D; Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Stoeckert CJ; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA., Tomko SS; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Wang H; Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA., Warrenfeltz S; Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA., Wieck R; Center for Research Computing, University of Notre Dame, Notre Dame, IN 46556, USA., Wilkinson PA; Institute of Systems, Molecular & Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK., Xu L; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA., Zheng J; Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2022 Jan 07; Vol. 50 (D1), pp. D898-D911.

Evolutionary divergent clusters of transcribed extinct truncated retroposons drive low mRNA expression and developmental regulation in the protozoan Leishmania.

Autor: Ferreira, Gabriel Reis^1,2 (AUTHOR), Emond-Rheault, Jean-Guillaume^1,2 (AUTHOR), Alves, Lysangela^1,3 (AUTHOR), Leprohon, Philippe^1,2 (AUTHOR), Smith, Martin A.^4,5,6 (AUTHOR), Papadopoulou, Barbara^1,2 (AUTHOR) barbara.papadopoulou@crchudequebec.ulaval.ca

Publikováno v: BMC Biology. 10/29/2024, Vol. 22 Issue 1, p1-21. 21p.

​Fusarium Protein Toolkit: a web-based resource for structural and variant analysis of Fusarium species.

Autor: Kim, Hye-Seon¹ (AUTHOR), Haley, Olivia C.² (AUTHOR), Portwood II, John L.² (AUTHOR), Harding, Stephen¹ (AUTHOR), Proctor, Robert H.¹ (AUTHOR), Woodhouse, Margaret R.² (AUTHOR), Sen, Taner Z.^3,4 (AUTHOR), Andorf, Carson M.^2,5 (AUTHOR) carson.andorf@usda.gov

Publikováno v: BMC Microbiology. 9/6/2024, Vol. 24 Issue 1, p1-13. 13p.