Prospective One-Health investigation into low-abundant extended-spectrum β-lactamase producing Enterobacterales enables detection of potential dissemination events and persistence.

Autor: García-Martín AB; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Switzerland; Department of Clinical Research, University Hospital Basel, Basel, Switzerland. Electronic address: anabelen.garciamartin@usb.ch., Aguilar-Bultet L; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Switzerland; Department of Clinical Research, University Hospital Basel, Basel, Switzerland. Electronic address: lisandra.aguilarbultet@usb.ch., Gómez-Sanz E; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Switzerland; Department of Clinical Research, University Hospital Basel, Basel, Switzerland. Electronic address: elena.gomezsanz@ubs.ch., Hug MA; State Laboratory Basel-City, Basel, Switzerland. Electronic address: monica.alt@bs.ch., Furger R; State Laboratory Basel-City, Basel, Switzerland. Electronic address: r.furger@unibas.ch., Eichenberger L; State Laboratory Basel-City, Basel, Switzerland. Electronic address: lucas.eichenberger@mibellegroup.com., Schindler R; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Switzerland; Department of Clinical Research, University Hospital Basel, Basel, Switzerland. Electronic address: ruth.schindler@usb.ch., Steffen I; Rothen Laboratory, Basel, Switzerland. Electronic address: i.steffen@labor-rothen.ch., Egli A; Applied Microbiology Research, Department of Biomedicine, University of Basel, Basel, Switzerland. Electronic address: aegli@imm.uzh.ch., Stadler T; Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland. Electronic address: tanja.stadler@bsse.ethz.ch., Bagutti C; State Laboratory Basel-City, Basel, Switzerland. Electronic address: claudia.bagutti@bs.ch., Tschudin-Sutter S; Division of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Switzerland; Department of Clinical Research, University Hospital Basel, Basel, Switzerland. Electronic address: sarah.tschudin@usb.ch.

Publikováno v: The Science of the total environment [Sci Total Environ] 2024 Nov 10; Vol. 950, pp. 175078. Date of Electronic Publication: 2024 Jul 26.

Monitoring an Emergent Pathogen at Low Incidence in Wastewater Using qPCR: Mpox in Switzerland.

Autor: Julian TR; Eawag, Swiss Federal Institute of Aquatic Science and Technology, Ueberlandstrasse 133, 8600, Dübendorf, Switzerland. tim.julian@eawag.ch.; Swiss Tropical and Public Health Institute, 4123, Allschwil, Switzerland. tim.julian@eawag.ch.; University of Basel, 4001, Basel, Switzerland. tim.julian@eawag.ch., Devaux AJ; Eawag, Swiss Federal Institute of Aquatic Science and Technology, Ueberlandstrasse 133, 8600, Dübendorf, Switzerland., Brülisauer L; Eawag, Swiss Federal Institute of Aquatic Science and Technology, Ueberlandstrasse 133, 8600, Dübendorf, Switzerland.; Institute of Integrative Biology, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland., Conforti S; Eawag, Swiss Federal Institute of Aquatic Science and Technology, Ueberlandstrasse 133, 8600, Dübendorf, Switzerland.; Department of Biosystems Science and Engineering, ETH Zurich, 4009, Basel, Switzerland., Rusch JC; Eawag, Swiss Federal Institute of Aquatic Science and Technology, Ueberlandstrasse 133, 8600, Dübendorf, Switzerland., Gan C; Eawag, Swiss Federal Institute of Aquatic Science and Technology, Ueberlandstrasse 133, 8600, Dübendorf, Switzerland., Bagutti C; State Laboratory of Basel-Stadt, Basel, Switzerland., Stadler T; Department of Biosystems Science and Engineering, ETH Zurich, 4009, Basel, Switzerland.; Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland., Kohn T; Laboratory of Environmental Virology, School of Architecture, Civil and Environmental Engineering, (ENAC), École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland., Ort C; Eawag, Swiss Federal Institute of Aquatic Science and Technology, Ueberlandstrasse 133, 8600, Dübendorf, Switzerland.

Publikováno v: Food and environmental virology [Food Environ Virol] 2024 Sep; Vol. 16 (3), pp. 269-279. Date of Electronic Publication: 2024 May 23.

How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort.

Autor: Wegner F; Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland., Cabrera-Gil B; Clinical Bioinformatics, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland., Tanguy A; Genesupport, Geneva, Switzerland., Beckmann C; Viollier AG, Allschwil, Switzerland., Beerenwinkel N; Department of Biosystems Science and Engineering, ETH Zurich, Switzerland & SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Bertelli C; Clinical Microbiology, University Hospital, Lausanne, Switzerland., Carrara M; NEXUS Personalized Health Technologies, ETH Zurich, Switzerland & SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Cerutti L; Health2030 Genome Center, Geneva, Switzerland., Chen C; Department of Biosystems Science and Engineering, ETH Zurich, Switzerland & SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Cordey S; Laboratory of Virology, Geneva University Hospitals, Geneva, Switzerland., Dumoulin A; Valais Hospital, Central Institute, Sion, Switzerland., du Plessis L; Department of Biosystems Science and Engineering, ETH Zurich, Switzerland & SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Friedli M; Health2030 Genome Center, Geneva, Switzerland., Gerth Y; Humanmedizinische Mikrobiologie, Zentrum für Labormedizin, St. Gallen, Switzerland., Greub G; Clinical Microbiology, University Hospital, Lausanne, Switzerland., Härri A; Biolytix, Witterswil, Switzerland., Hirsch H; Clinical Virology, University Hospital, Basel, Switzerland., Howald C; Health2030 Genome Center, Geneva, Switzerland., Huber M; Institute of Medical Virology, University of Zurich, Zurich, Switzerland., Imhof A; Spitalregion Oberaargau, Langenthal, Switzerland., Kaiser L; Laboratory of Virology, Geneva University Hospitals, Geneva, Switzerland., Kufner V; Institute of Medical Virology, University of Zurich, Zurich, Switzerland., Leib SL; Institute for Infectious Diseases (IFIK), University of Bern, Bern, Switzerland., Leuzinger K; Clinical Virology, University Hospital, Basel, Switzerland., Lleshi E; Microbiology Department, Synlab, Bioggio, Switzerland., Martinetti G; Department of Laboratory Medicine, Ente Ospedaliero Cantonale, Bellinzona, Switzerland., Mäusezahl M; Federal Office of Public Health, Bern, Switzerland., Moraz M; Valais Hospital, Central Institute, Sion, Switzerland., Neher R; Biozentrum, University of Basel, Switzerland & SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Nolte O; Humanmedizinische Mikrobiologie, Zentrum für Labormedizin, St. Gallen, Switzerland., Ramette A; Institute for Infectious Diseases (IFIK), University of Bern, Bern, Switzerland., Redondo M; Viollier AG, Allschwil, Switzerland., Risch L; Labor Dr. Risch, Buchs, Switzerland., Rohner L; Federal Office of Public Health, Bern, Switzerland., Roloff T; Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland., Schläepfer P; Clinical Microbiology, University Hospital, Basel, Switzerland., Schneider K; Federal Office of Public Health, Bern, Switzerland., Singer F; NEXUS Personalized Health Technologies, ETH Zurich, Switzerland & SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Spina V; Department of Laboratory Medicine, Ente Ospedaliero Cantonale, Bellinzona, Switzerland., Stadler T; Department of Biosystems Science and Engineering, ETH Zurich, Switzerland & SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Studer E; Federal Office of Public Health, Bern, Switzerland., Topolsky I; Department of Biosystems Science and Engineering, ETH Zurich, Switzerland & SIB Swiss Institute of Bioinformatics, Basel, Switzerland., Trkola A; Institute of Medical Virology, University of Zurich, Zurich, Switzerland., Walther D; Clinical Bioinformatics, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland., Wohlwend N; Labor Dr. Risch, Buchs, Switzerland., Zehnder C; Microbiology Department, Synlab, Bioggio, Switzerland., Neves A; Clinical Bioinformatics, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland., Egli A; Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland.

Publikováno v: Microbiology spectrum [Microbiol Spectr] 2024 May 02; Vol. 12 (5), pp. e0362823. Date of Electronic Publication: 2024 Mar 18.

Generative Bayesian modeling to nowcast the effective reproduction number from line list data with missing symptom onset dates.

Autor: Lison A; Department of Biosystems Science and Engineering, ETH Zurich, Zurich, Switzerland.; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland., Abbott S; Centre for Mathematical Modelling of Infectious Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom., Huisman J; Physics of Living Systems, Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America., Stadler T; Department of Biosystems Science and Engineering, ETH Zurich, Zurich, Switzerland.; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.

Publikováno v: PLoS computational biology [PLoS Comput Biol] 2024 Apr 16; Vol. 20 (4), pp. e1012021. Date of Electronic Publication: 2024 Apr 16 (Print Publication: 2024).

Detection of SARS-CoV-2 RNA in a Zoo-Kept Red Fox ( Vulpes vulpes ).

Autor: Chan T; Clinical Laboratory, Department of Clinical Diagnostics and Services, and Center for Clinical Studies, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 260, 8057 Zurich, Switzerland., Ginders J; Clinical Laboratory, Department of Clinical Diagnostics and Services, and Center for Clinical Studies, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 260, 8057 Zurich, Switzerland., Kuhlmeier E; Clinical Laboratory, Department of Clinical Diagnostics and Services, and Center for Clinical Studies, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 260, 8057 Zurich, Switzerland., Meli ML; Clinical Laboratory, Department of Clinical Diagnostics and Services, and Center for Clinical Studies, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 260, 8057 Zurich, Switzerland., Bönzli E; Clinical Laboratory, Department of Clinical Diagnostics and Services, and Center for Clinical Studies, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 260, 8057 Zurich, Switzerland., Meili T; Clinical Laboratory, Department of Clinical Diagnostics and Services, and Center for Clinical Studies, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 260, 8057 Zurich, Switzerland., Hüttl J; Clinical Laboratory, Department of Clinical Diagnostics and Services, and Center for Clinical Studies, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 260, 8057 Zurich, Switzerland., Hatt JM; Clinic for Zoo Animals, Exotic Pets and Wildlife, Department of Small Animals, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 260, 8057 Zurich, Switzerland., Hindenlang Clerc K; Foundation Wildnispark Zurich, Alte Sihltalstrasse 38, 8135 Sihlwald, Switzerland., Kipar A; Institute of Veterinary Pathology, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 268, 8057 Zurich, Switzerland., Wyss F; Zoologischer Garten Basel AG, Binningerstrasse 40, 4054 Basel, Switzerland., Wenker C; Zoologischer Garten Basel AG, Binningerstrasse 40, 4054 Basel, Switzerland., Ryser-Degiorgis MP; Institute for Fish and Wildlife Health, Vetsuisse Faculty, University of Bern, 3012 Bern, Switzerland., Valenzuela Agüí C; Department of Biosystems Science and Engineering, ETH Zurich, Schanzenstrasse 44, Postfach, 4009 Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland., Urban C; Functional Genomics Center, ETH Zurich and University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland., Beisel C; Department of Biosystems Science and Engineering, ETH Zurich, Schanzenstrasse 44, Postfach, 4009 Basel, Switzerland., Stadler T; Department of Biosystems Science and Engineering, ETH Zurich, Schanzenstrasse 44, Postfach, 4009 Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland., Hofmann-Lehmann R; Clinical Laboratory, Department of Clinical Diagnostics and Services, and Center for Clinical Studies, Vetsuisse Faculty, University of Zurich, Winterthurerstrasse 260, 8057 Zurich, Switzerland.

Publikováno v: Viruses [Viruses] 2024 Mar 28; Vol. 16 (4). Date of Electronic Publication: 2024 Mar 28.