Profiling invasive Plasmodium falciparum merozoites using an integrated omics approach.

Autor: Kumar K; Laboratory of Malaria Immunology and Vaccinology, NIAID, NIH, Rockville, MD, USA., Srinivasan P; Laboratory of Malaria and Vector Research, NIAID, NIH, Rockville, MD, USA. psriniv3@jhu.edu.; Johns Hopkins Malaria Research Institute, Department of Molecular Microbiology and Immunology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA. psriniv3@jhu.edu., Nold MJ; Waters Corporation, Milford, MA, USA., Moch JK; Walter Reed Army Institute of Research, Silver Spring, MD, USA., Reiter K; Laboratory of Malaria Immunology and Vaccinology, NIAID, NIH, Rockville, MD, USA., Sturdevant D; Genomics Unit, Research Technologies Section, Rocky Mountain Laboratories, NIAID, NIH, Hamilton, MT, USA., Otto TD; Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, United Kingdom., Squires RB; Computational Biology Section, Bioinformatics and Computational Biosciences Branch, NIAID, NIH, Bethesda, MD, USA., Herrera R; Laboratory of Malaria Immunology and Vaccinology, NIAID, NIH, Rockville, MD, USA., Nagarajan V; Computational Biology Section, Bioinformatics and Computational Biosciences Branch, NIAID, NIH, Bethesda, MD, USA., Rayner JC; Wellcome Trust Sanger Institute, Hinxton, Cambridge, CB10 1SA, United Kingdom., Porcella SF; Genomics Unit, Research Technologies Section, Rocky Mountain Laboratories, NIAID, NIH, Hamilton, MT, USA., Geromanos SJ; Waters Corporation, Milford, MA, USA., Haynes JD; Walter Reed Army Institute of Research, Silver Spring, MD, USA., Narum DL; Laboratory of Malaria Immunology and Vaccinology, NIAID, NIH, Rockville, MD, USA. dnarum@niaid.nih.gov.

Publikováno v: Scientific reports [Sci Rep] 2017 Dec 07; Vol. 7 (1), pp. 17146. Date of Electronic Publication: 2017 Dec 07.

DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides.

Autor: Pirtskhalava M; Ivane Beritashvili Center of Experimental Biomedicine, Tbilisi 0160, Georgia m.pirtskhalava@lifescience.org.ge., Gabrielian A; Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA., Cruz P; Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA., Griggs HL; Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA., Squires RB; Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA., Hurt DE; Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA., Grigolava M; Ivane Beritashvili Center of Experimental Biomedicine, Tbilisi 0160, Georgia., Chubinidze M; Ivane Beritashvili Center of Experimental Biomedicine, Tbilisi 0160, Georgia., Gogoladze G; Ivane Beritashvili Center of Experimental Biomedicine, Tbilisi 0160, Georgia., Vishnepolsky B; Ivane Beritashvili Center of Experimental Biomedicine, Tbilisi 0160, Georgia., Alekseyev V; Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA., Rosenthal A; Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA., Tartakovsky M; Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2016 Jul 27; Vol. 44 (13), pp. 6503. Date of Electronic Publication: 2016 Apr 08.

Finding our way through phenotypes.

Autor: Deans AR; Department of Entomology, Pennsylvania State University, University Park, Pennsylvania, United States of America., Lewis SE; Genome Division, Lawrence Berkeley National Lab, Berkeley, California, United States of America., Huala E; Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America; Phoenix Bioinformatics, Palo Alto, California, United States of America., Anzaldo SS; School of Life Sciences, Arizona State University, Tempe, Arizona, United States of America., Ashburner M; Department of Genetics, University of Cambridge, Cambridge, United Kingdom., Balhoff JP; National Evolutionary Synthesis Center, Durham, North Carolina, United States of America., Blackburn DC; Department of Vertebrate Zoology and Anthropology, California Academy of Sciences, San Francisco, California, United States of America., Blake JA; The Jackson Laboratory, Bar Harbor, Maine, United States of America., Burleigh JG; Department of Biology, University of Florida, Gainesville, Florida, United States of America., Chanet B; Muséum national d'Histoire naturelle, Département Systématique et Evolution, Paris, France., Cooper LD; Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America., Courtot M; Molecular Biology and Biochemistry Department, Simon Fraser University, Burnaby, British Columbia, Canada., Csösz S; MTA-ELTE-MTM, Ecology Research Group, Pázmány Péter sétány 1C, Budapest, Hungary., Cui H; School of Information Resources and Library Science, University of Arizona, Tucson, Arizona, United States of America., Dahdul W; Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America., Das S; Department of Botany, University of Delhi, Delhi, India., Dececchi TA; Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America., Dettai A; Muséum national d'Histoire naturelle, Département Systématique et Evolution, Paris, France., Diogo R; Department of Anatomy, Howard University College of Medicine, Washington D.C., United States of America., Druzinsky RE; Department of Oral Biology, College of Dentistry, University of Illinois, Chicago, Illinois, United States of America., Dumontier M; Stanford Center for Biomedical Informatics Research, Stanford, California, United States of America., Franz NM; School of Life Sciences, Arizona State University, Tempe, Arizona, United States of America., Friedrich F; Biocenter Grindel and Zoological Museum, Hamburg University, Hamburg, Germany., Gkoutos GV; Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, United Kingdom., Haendel M; Department of Medical Informatics & Epidemiology, Oregon Health & Science University, Portland, Oregon, United States of America., Harmon LJ; Department of Biological Sciences, University of Idaho, Moscow, Idaho, United States of America., Hayamizu TF; Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, Maine, United States of America., He Y; Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, and Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, Michigan, United States of America., Hines HM; Department of Entomology, Pennsylvania State University, University Park, Pennsylvania, United States of America., Ibrahim N; Department of Organismal Biology and Anatomy, University of Chicago, Chicago, Illinois, United States of America., Jackson LM; Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America., Jaiswal P; Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America., James-Zorn C; Cincinnati Children's Hospital, Division of Developmental Biology, Cincinnati, Ohio, United States of America., Köhler S; Institute for Medical Genetics and Human Genetics, Charité-Universitätsmedizin Berlin, Berlin, Germany., Lecointre G; Muséum national d'Histoire naturelle, Département Systématique et Evolution, Paris, France., Lapp H; National Evolutionary Synthesis Center, Durham, North Carolina, United States of America., Lawrence CJ; Department of Genetics, Development and Cell Biology and Department of Agronomy, Iowa State University, Ames, Iowa, United States of America., Le Novère N; Signalling ISP, Babraham Institute, Babraham, Cambridgeshire, UK., Lundberg JG; Department of Ichthyology, The Academy of Natural Sciences, Philadelphia, Pennsylvania, United States of America., Macklin J; Eastern Cereal and Oilseed Research Centre, Ottawa, Ontario, Canada., Mast AR; Department of Biological Science, Florida State University, Tallahassee, Florida, United States of America., Midford PE; Richmond, Virginia, United States of America., Mikó I; Department of Entomology, Pennsylvania State University, University Park, Pennsylvania, United States of America., Mungall CJ; Genome Division, Lawrence Berkeley National Lab, Berkeley, California, United States of America., Oellrich A; European Molecular Biology Laboratory - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom., Osumi-Sutherland D; European Molecular Biology Laboratory - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom., Parkinson H; European Molecular Biology Laboratory - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom., Ramírez MJ; Division of Arachnology, Museo Argentino de Ciencias Naturales - CONICET, Buenos Aires, Argentina., Richter S; Allgemeine & Spezielle Zoologie, Institut für Biowissenschaften, Universität Rostock, Universitätsplatz 2, Rostock, Germany., Robinson PN; Institut für Medizinische Genetik und Humangenetik Charité - Universitätsmedizin Berlin, Berlin, Germany., Ruttenberg A; School of Dental Medicine, University at Buffalo, Buffalo, New York, United States of America., Schulz KS; Smithsonian Institution, National Museum of Natural History, Washington, D.C., United States of America., Segerdell E; Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, United States of America., Seltmann KC; Division of Invertebrate Zoology, American Museum of Natural History, New York, New York, United States of America., Sharkey MJ; Department of Entomology, University of Kentucky, Lexington, Kentucky, United States of America., Smith AD; Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, United States of America., Smith B; Department of Philosophy, University at Buffalo, Buffalo, New York, United States of America., Specht CD; Department of Plant and Microbial Biology, Integrative Biology, and the University and Jepson Herbaria, University of California, Berkeley, California, United States of America., Squires RB; Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America., Thacker RW; Department of Biology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America., Thessen A; The Data Detektiv, 1412 Stearns Hill Road, Waltham, Massachusetts, United States of America., Fernandez-Triana J; Canadian National Collection of Insects, Ottawa, Ontario, Canada., Vihinen M; Department of Experimental Medical Science, Lund University, Lund, Sweden., Vize PD; Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada., Vogt L; Universität Bonn, Institut für Evolutionsbiologie und Ökologie, Bonn, Germany., Wall CE; Department of Evolutionary Anthropology, Duke University, Durham, North Carolina, United States of America., Walls RL; iPlant Collaborative University of Arizona, Thomas J. Keating Bioresearch Building, Tucson, Arizona, United States of America., Westerfeld M; Institute of Neuroscience, University of Oregon, Eugene, Oregon, United States of America., Wharton RA; Department of Entomology, Texas A & M University, College, Station, Texas, United States of America., Wirkner CS; Allgemeine & Spezielle Zoologie, Institut für Biowissenschaften, Universität Rostock, Universitätsplatz 2, Rostock, Germany., Woolley JB; Department of Entomology, Texas A & M University, College, Station, Texas, United States of America., Yoder MJ; Illinois Natural History Survey, University of Illinois, Champaign, Illinois, United States of America., Zorn AM; Cincinnati Children's Hospital, Division of Developmental Biology, Cincinnati, Ohio, United States of America., Mabee P; Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America.

Publikováno v: PLoS biology [PLoS Biol] 2015 Jan 06; Vol. 13 (1), pp. e1002033. Date of Electronic Publication: 2015 Jan 06 (Print Publication: 2015).

Standardized metadata for human pathogen/vector genomic sequences.

Autor: Dugan VG; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America; National Institute of Allergy and Infectious Diseases, Rockville, Maryland, United States of America., Emrich SJ; University of Notre Dame, Notre Dame, Indiana, United States of America., Giraldo-Calderón GI; University of Notre Dame, Notre Dame, Indiana, United States of America., Harb OS; University of Pennsylvania, Philadelphia, Pennsylvania, United States of America., Newman RM; Broad Institute, Cambridge, Massachusetts, United States of America., Pickett BE; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America., Schriml LM; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Stockwell TB; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America., Stoeckert CJ Jr; University of Pennsylvania, Philadelphia, Pennsylvania, United States of America., Sullivan DE; Cyberinfrastructure Division, Virginia Bioinformatics Institute, Blacksburg, Virginia, United States of America., Singh I; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America., Ward DV; Broad Institute, Cambridge, Massachusetts, United States of America., Yao A; National Institute of Allergy and Infectious Diseases, Rockville, Maryland, United States of America., Zheng J; University of Pennsylvania, Philadelphia, Pennsylvania, United States of America., Barrett T; National Center for Biotechnology Information, National Library of Medicine, Bethesda, Maryland, United States of America., Birren B; Broad Institute, Cambridge, Massachusetts, United States of America., Brinkac L; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America., Bruno VM; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Caler E; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America., Chapman S; Broad Institute, Cambridge, Massachusetts, United States of America., Collins FH; University of Notre Dame, Notre Dame, Indiana, United States of America., Cuomo CA; Broad Institute, Cambridge, Massachusetts, United States of America., Di Francesco V; National Institute of Allergy and Infectious Diseases, Rockville, Maryland, United States of America., Durkin S; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America., Eppinger M; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Feldgarden M; Broad Institute, Cambridge, Massachusetts, United States of America., Fraser C; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Fricke WF; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Giovanni M; National Institute of Allergy and Infectious Diseases, Rockville, Maryland, United States of America., Henn MR; Broad Institute, Cambridge, Massachusetts, United States of America., Hine E; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Hotopp JD; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Karsch-Mizrachi I; National Center for Biotechnology Information, National Library of Medicine, Bethesda, Maryland, United States of America., Kissinger JC; University of Georgia, Athens, Georgia, United States of America., Lee EM; National Institute of Allergy and Infectious Diseases, Rockville, Maryland, United States of America., Mathur P; National Institute of Allergy and Infectious Diseases, Rockville, Maryland, United States of America., Mongodin EF; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Murphy CI; Broad Institute, Cambridge, Massachusetts, United States of America., Myers G; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Neafsey DE; Broad Institute, Cambridge, Massachusetts, United States of America., Nelson KE; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America., Nierman WC; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America., Puzak J; Kelly Government Solutions, Rockville, Maryland, United States of America., Rasko D; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Roos DS; University of Pennsylvania, Philadelphia, Pennsylvania, United States of America., Sadzewicz L; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Silva JC; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Sobral B; Cyberinfrastructure Division, Virginia Bioinformatics Institute, Blacksburg, Virginia, United States of America., Squires RB; National Institute of Allergy and Infectious Diseases, Rockville, Maryland, United States of America., Stevens RL; Argonne National Laboratory, Lemont, Illinois, United States of America., Tallon L; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Tettelin H; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Wentworth D; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America., White O; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America., Will R; Cyberinfrastructure Division, Virginia Bioinformatics Institute, Blacksburg, Virginia, United States of America., Wortman J; Broad Institute, Cambridge, Massachusetts, United States of America., Zhang Y; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America., Scheuermann RH; J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America; Department of Pathology, University of California San Diego, San Diego, California, United States of America.

Publikováno v: PloS one [PLoS One] 2014 Jun 17; Vol. 9 (6), pp. e99979. Date of Electronic Publication: 2014 Jun 17 (Print Publication: 2014).

Influenza research database: an integrated bioinformatics resource for influenza research and surveillance.

Autor: Squires RB; Department of Pathology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA., Noronha J, Hunt V, García-Sastre A, Macken C, Baumgarth N, Suarez D, Pickett BE, Zhang Y, Larsen CN, Ramsey A, Zhou L, Zaremba S, Kumar S, Deitrich J, Klem E, Scheuermann RH

Publikováno v: Influenza and other respiratory viruses [Influenza Other Respir Viruses] 2012 Nov; Vol. 6 (6), pp. 404-16. Date of Electronic Publication: 2012 Jan 20.