Zobrazeno 1 - 10
of 21
pro vyhledávání: '"Spencer Bliven"'
Autor:
Aleix Lafita, Spencer Bliven, Andreas Prlić, Dmytro Guzenko, Peter W Rose, Anthony Bradley, Paolo Pavan, Douglas Myers-Turnbull, Yana Valasatava, Michael Heuer, Matt Larson, Stephen K Burley, Jose M Duarte
Publikováno v:
PLoS Computational Biology, Vol 15, Iss 2, p e1006791 (2019)
BioJava is an open-source project that provides a Java library for processing biological data. The project aims to simplify bioinformatic analyses by implementing parsers, data structures, and algorithms for common tasks in genomics, structural biolo
Externí odkaz:
https://doaj.org/article/5c110558d5a8402a913e0beeea63fb8e
Publikováno v:
PLoS Computational Biology, Vol 14, Iss 4, p e1006104 (2018)
A correct assessment of the quaternary structure of proteins is a fundamental prerequisite to understanding their function, physico-chemical properties and mode of interaction with other proteins. Currently about 90% of structures in the Protein Data
Externí odkaz:
https://doaj.org/article/482ad4f909ee4490bc71b6a82063cdaa
Autor:
Spencer Bliven, Andreas Prlić
Publikováno v:
PLoS Computational Biology, Vol 8, Iss 3, p e1002445 (2012)
Externí odkaz:
https://doaj.org/article/61fb8b96debc416a84c91d838ee921a4
Autor:
Cecilia M. Casadei, Ahmad Hosseinizadeh, Spencer Bliven, Tobias Weinert, Jörg Standfuss, Russell Fung, Gebhard F. X. Schertler, Robin Santra
Publikováno v:
Structural dynamics 10(3), 034101 (2023). doi:10.1063/4.0000178
Structural Dynamics, 10 (3)
Structural Dynamics, 10 (3)
Structural dynamics 10(3), 034101 (2023). doi:10.1063/4.0000178
Low-pass spectral analysis (LPSA) is a recently developed dynamics retrieval algorithm showing excellent retrieval properties when applied to model data affected by extreme incomple
Low-pass spectral analysis (LPSA) is a recently developed dynamics retrieval algorithm showing excellent retrieval properties when applied to model data affected by extreme incomple
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::89ca19f1bc342fb2dec2864cd6b2790a
Autor:
Roger Benoit, Tobias Bierig, Spencer Bliven, Aleix Lafita, Emiliya Poghosyan, Gabriella Collu, Inayathulla Mohammed
The insertion of fusion proteins has enabled the crystallization of a wide range of G-protein-coupled receptors (GPCRs). Here, we explored the possibility of using a larger fusion protein, inserted into the third intracellular loop (ICL3) of β1-adre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c4c8f7ac2a3bc0a4c41c1c8038adbef0
https://doi.org/10.1101/2021.09.25.461805
https://doi.org/10.1101/2021.09.25.461805
Publikováno v:
Frontiers in bioinformatics. 1
The Tandem Repeat Annotation Library (TRAL) focuses on analyzing tandem repeat units in genomic sequences. TRAL can integrate and harmonize tandem repeat annotations from a large number of external tools, and provides a statistical model for evaluati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d839338931553cbaece9656967f0c5f6
https://pubmed.ncbi.nlm.nih.gov/36303789
https://pubmed.ncbi.nlm.nih.gov/36303789
Publikováno v:
Journal of Medicinal Chemistry. 60:2879-2889
Covalently bound protein kinase inhibitors have been frequently designed to target noncatalytic cysteines at the ATP binding site. Thus, it is important to know if a given cysteine can form a covalent bond. Here we combine a function-site interaction
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::688cb9f8e4ce7a69c393a5bab84c1feb
https://doi.org/10.1021/acs.jmedchem.6b01815
https://doi.org/10.1021/acs.jmedchem.6b01815
Publikováno v:
PLoS Computational Biology, 15 (4)
PLoS Computational Biology, Vol 15, Iss 4, p e1006842 (2019)
PLoS Computational Biology, Vol 15, Iss 4, p e1006842 (2019)
Many proteins fold into highly regular and repetitive three dimensional structures. The analysis of structural patterns and repeated elements is fundamental to understand protein function and evolution. We present recent improvements to the CE-Symm t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::10b1960dd8bfcf8adbd3f1727e23c5e3
Publikováno v:
PLoS Computational Biology
PLoS Computational Biology, Vol 14, Iss 4, p e1006104 (2018)
PLoS Computational Biology, 14 (4)
PLoS Computational Biology, Vol 14, Iss 4, p e1006104 (2018)
PLoS Computational Biology, 14 (4)
A correct assessment of the quaternary structure of proteins is a fundamental prerequisite to understanding their function, physico-chemical properties and mode of interaction with other proteins. Currently about 90% of structures in the Protein Data
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::317f37656c9d10bd0b014bca554c6fc7
http://europepmc.org/articles/PMC5945228
http://europepmc.org/articles/PMC5945228
Autor:
Andriy Kryshtafovych, Martino Bertoni, Aleix Lafita, Spencer Bliven, Torsten Schwede, Bohdan Monastyrskyy, Guido Capitani, Jose M. Duarte
We present the results of the first independent assessment of protein assemblies in CASP. A total of 1624 oligomeric models were submitted by 108 predictor groups for the 30 oligomeric targets in the CASP12 edition. We evaluated the accuracy of oligo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a3dbc3d85f2a3d58a204d338994d54e2
https://europepmc.org/articles/PMC5949145/
https://europepmc.org/articles/PMC5949145/