Applying the FAIR Principles to Computational Workflows

Autor: Wilkinson, Sean R., Aloqalaa, Meznah, Belhajjame, Khalid, Crusoe, Michael R., Kinoshita, Bruno de Paula, Gadelha, Luiz, Garijo, Daniel, Gustafsson, Ove Johan Ragnar, Juty, Nick, Kanwal, Sehrish, Khan, Farah Zaib, Köster, Johannes, Gehlen, Karsten Peters-von, Pouchard, Line, Rannow, Randy K., Soiland-Reyes, Stian, Soranzo, Nicola, Sufi, Shoaib, Sun, Ziheng, Vilne, Baiba, Wouters, Merridee A., Yuen, Denis, Goble, Carole

Recent trends within computational and data sciences show an increasing recognition and adoption of computational workflows as tools for productivity, reproducibility, and democratized access to platforms and processing know-how. As digital objects t

Externí odkaz: http://arxiv.org/abs/2410.03490

The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

Autor: Abueg, L.A.L., Afgan, E., Allart, O., Awan, A.H., Bacon, W.A., Baker, D., Bassetti, M., Batut, B., Bernt, M., Blankenberg, D., Bombarely, A., Bretaudeau, A., Bromhead, C.J., Burke, M.L., Capon, P.K., Čech, M., Chavero-Díez, M., Chilton, J.M., Collins, T.J., Coppens, F., Coraor, N., Cuccuru, G., Cumbo, F., Davis, J., De Geest, P.F., de Koning, W., Demko, M., DeSanto, A., Domínguez Begines, J.M., Doyle, M.A., Droesbeke, B., Erxleben-Eggenhofer, A., Föll, M.C., Formenti, G., Fouilloux, A., Gangazhe, R., Genthon, T., Goecks, J., Gonzalez Beltran, A.N., Goonasekera, N.A., Goué, N., Griffin, T.J., Grüning, B.A., Guerler, A., Gundersen, S., Gustafsson, O.J.R., Hall, C., Harrop, T.W., Hecht, H., Heidari, A., Heisner, T., Heyl, F., Hiltemann, S., Hotz, H.-R., Hyde, C.J., Jagtap, P.D., Jakiela, J., Johnson, J.E., Joshi, J., Jossé, M., Jum'ah, Khaled, Kalaš, M., Kamieniecka, Katarzyna, Kayikcioglu, T., Konkol, M., Kostrykin, L., Kucher, N., Kumar, A., Kuntz, M., Lariviere, D., Lazarus, R., Le Bras, Y., Le Corguillé, G., Lee, J., Leo, S., Liborio, L., Libouban, R., López Tabernero, D., Lopez-Delisle, L., Los, L.S., Mahmoud, A., Makunin, I., Marin, P., Mehta, S., Mok, W., Moreno, P.A., Morier-Genoud, F., Mosher, S., Müller, T., Nasr, E., Nekrutenko, A., Nelson, T.M., Oba, A.J., Ostrovsky, A., Polunina, P.V., Poterlowicz, Krzysztof, Price, E.J., Price, G.R., Rasche, H., Raubenolt, B., Royaux, C., Sargent, L., Savage, M.T., Savchenko, V., Savchenko, D., Schatz, M.C., Seguineau, P., Serrano-Solano, B., Soranzo, N., Srikakulam, S.K., Suderman, K., Syme, A.E., Tangaro, M.A., Tedds, J.A., Tekman, M., Thang, W.C.M., Thanki, A.S., Uhl, M., van den Beek, M., Varshney, D., Vessio, J., Videm, P., Von Kuster, G., Watson, G.R., Whitaker-Allen, N., Winter, U., Wolstencroft, M., Zambelli, F., Zierep, P., Zoabi, R.

Yes
Galaxy (https://galaxyproject.org) is deployed globally, predominantly through free-to-use services, supporting user-driven research that broadens in scope each year. Users are attracted to public Galaxy services by platform stability, tool

Externí odkaz: http://hdl.handle.net/10454/19930

eQTLs identify regulatory networks and drivers of variation in the individual response to sepsis

Autor: Addison, Jenni, Galley, Helen, Hall, Sally, Roughton, Sian, Taylor, Jane, Tennant, Heather, Webster, Nigel, Guleri, Achyut, Waddington, Natalia, Arawwawala, Dilshan, Durcan, John, Mitchell-Inwang, Christine, Short, Alasdair, Smolen, Susan, Swan, Karen, Williams, Sarah, Errington, Emily, Gordon, Tony, Templeton, Maie, McCauley, Marie, Venatesh, Pyda, Ward, Geraldine, Baudouin, Simon, Grier, Sally, Hall, Elaine, Higham, Charley, Soar, Jasmeet, Brett, Stephen, Kitson, David, Moreno, Juan, Mountford, Laura, Wilson, Robert, Hall, Peter, Hewlett, Jackie, McKechnie, Stuart, Faras-Arraya, Roser, Garrard, Christopher, Hutton, Paula, Millo, Julian, Parsons, Penny, Smiths, Alex, Young, Duncan, Raymode, Parizade, Andreou, Prem, Bowrey, Sarah, Hales, Dawn, Kazembe, Sandra, Rich, Natalie, Roberts, Emma, Thompson, Jonathan, Fletcher, Simon, Glister, Georgina, Rosbergen, Melissa, Cuesta, Jeronimo Moreno, Bion, Julian, Carrera, Ronald, Lees, Sarah, Millar, Joanne, Mitchell, Natalie, Nilson, Annette, Perry, Elsa Jane, Ruel, Sebastian, Wilde, Jude, Willis, Heather, Atkinson, Jane, Brown, Abby, Jacques, Nicola, Kapila, Atul, Prowse, Heather, Bland, Martin, Bullock, Lynne, Harrison, Donna, Krige, Anton, Mills, Gary, Humphreys, John, Armitage, Kelsey, Laha, Shond, Baldwin, Jacqueline, Walsh, Angela, Doherty, Nicola, Drage, Stephen, Ortiz-Ruiz de Gordoa, Laura, Lowes, Sarah, Walsh, Helen, Calder, Verity, Swan, Catherine, Payne, Heather, Higgins, David, Andrews, Sarah, Mappleback, Sarah, Hinds, Charles, Watson, D., McLees, Eleanor, Purdy, Alice, Stotz, Martin, Ochelli-Okpue, Adaeze, Bonner, Stephen, Whitehead, Iain, Hugil, Keith, Goodridge, Victoria, Cawthor, Louisa, Kuper, Martin, Pahary, Sheik, Bellingan, Geoffrey, Marshall, Richard, Montgomery, Hugh, Ryu, Jung Hyun, Bercades, Georgia, Boluda, Susan, Bentley, Andrew, Mccalman, Katie, Jefferies, Fiona, Allcock, Alice, Burnham, Katie, Davenport, Emma, Geoghegan, Cyndi, Knight, Julian, Maugeri, Narelle, Mi, Yuxin, Radhakrishnan, Jayachandran, Burnham, Katie L., Milind, Nikhil, Lee, Wanseon, Kwok, Andrew J., Cano-Gamez, Kiki, Geoghegan, Cyndi G., Zhang, Ping, Soranzo, Nicole, Hinds, Charles J., Knight, Julian C., Davenport, Emma E.

Publikováno v: In Cell Genomics 10 July 2024 4(7)

A genome-wide association study of blood cell morphology identifies cellular proteins implicated in disease aetiology

Autor: Parsa Akbari, Dragana Vuckovic, Luca Stefanucci, Tao Jiang, Kousik Kundu, Roman Kreuzhuber, Erik L. Bao, Janine H. Collins, Kate Downes, Luigi Grassi, Jose A. Guerrero, Stephen Kaptoge, Julian C. Knight, Stuart Meacham, Jennifer Sambrook, Denis Seyres, Oliver Stegle, Jeffrey M. Verboon, Klaudia Walter, Nicholas A. Watkins, John Danesh, David J. Roberts, Emanuele Di Angelantonio, Vijay G. Sankaran, Mattia Frontini, Stephen Burgess, Taco Kuijpers, James E. Peters, Adam S. Butterworth, Willem H. Ouwehand, Nicole Soranzo, William J. Astle

Publikováno v: Nature Communications, Vol 14, Iss 1, Pp 1-19 (2023)

Abstract Blood cells contain functionally important intracellular structures, such as granules, critical to immunity and thrombosis. Quantitative variation in these structures has not been subjected previously to large-scale genetic analysis. We perf

Externí odkaz: https://doaj.org/article/933ad5fb05dc4e368d06635bf8fe0d85

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