Zobrazeno 1 - 10
of 64
pro vyhledávání: '"Sophie Schbath"'
Autor:
Mahendra Mariadassou, Laurent X. Nouvel, Fabienne Constant, Diego P. Morgavi, Lucie Rault, Sarah Barbey, Emmanuelle Helloin, Olivier Rué, Sophie Schbath, Frederic Launay, Olivier Sandra, Rachel Lefebvre, Yves Le Loir, Pierre Germon, Christine Citti, Sergine Even
Publikováno v:
Animal Microbiome, Vol 5, Iss 1, Pp 1-17 (2023)
Abstract Background Host-associated microbes are major determinants of the host phenotypes. In the present study, we used dairy cows with different scores of susceptibility to mastitis with the aim to explore the relationships between microbiota comp
Externí odkaz:
https://doaj.org/article/e5fa6b808cc0402291120b44bec28171
Autor:
Ariane Bize, Cédric Midoux, Mahendra Mariadassou, Sophie Schbath, Patrick Forterre, Violette Da Cunha
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-22 (2021)
Abstract Background K-mer-based methods have greatly advanced in recent years, largely driven by the realization of their biological significance and by the advent of next-generation sequencing. Their speed and their independence from the annotation
Externí odkaz:
https://doaj.org/article/a7e90addb57b47a1992fd79eeb0adba8
Autor:
Julie Hurel, Sophie Schbath, Stéphanie Bougeard, Mathieu Rolland, Mauro Petrillo, Fabrice Touzain
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-17 (2020)
Abstract Background The European Community has adopted very restrictive policies regarding the dissemination and use of genetically modified organisms (GMOs). In fact, a maximum threshold of 0.9% of contaminating GMOs is tolerated for a “GMO-free
Externí odkaz:
https://doaj.org/article/184eb444b3124f03b4a5c4313367f52f
Autor:
Gaëtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier, Claire Lemaitre
Publikováno v:
PeerJ Computer Science, Vol 2, p e94 (2016)
Background Large scale metagenomic projects aim to extract biodiversity knowledge between different environmental conditions. Current methods for comparing microbial communities face important limitations. Those based on taxonomical or functional ass
Externí odkaz:
https://doaj.org/article/14a278f10cd14792be92c5fbc9623bb1
Autor:
David Halpern, Hélène Chiapello, Sophie Schbath, Stéphane Robin, Christelle Hennequet-Antier, Alexandra Gruss, Meriem El Karoui
Publikováno v:
PLoS Genetics, Vol 3, Iss 9, Pp 1614-1621 (2007)
Bacterial biodiversity at the species level, in terms of gene acquisition or loss, is so immense that it raises the question of how essential chromosomal regions are spared from uncontrolled rearrangements. Protection of the genome likely depends on
Externí odkaz:
https://doaj.org/article/9e2f8b89e02e42afab1aa16545d80cc6
Autor:
Marianne De Paepe, Geoffrey Hutinet, Olivier Son, Jihane Amarir-Bouhram, Sophie Schbath, Marie-Agnès Petit
Publikováno v:
PLoS Genetics, Vol 10, Iss 3, p e1004181 (2014)
Bacteriophages (or phages) dominate the biosphere both numerically and in terms of genetic diversity. In particular, genomic comparisons suggest a remarkable level of horizontal gene transfer among temperate phages, favoring a high evolution rate. Mo
Externí odkaz:
https://doaj.org/article/b6a84fc0ec5c4e0780a7b9e423d7d668
Autor:
Benoit Goutorbe, Anne-Laure Abraham, Mahendra Mariadassou, Anne Plauzolles, Ghislain Bidaut, Philippe Halfon, Sophie Schbath
Background Shallow shotgun metagenomics (SSM) has been recently suggested as a promising strategy to study human microbiota, providing nearly identical taxonomic profiles to deep shotgun metagenomics but at a sequencing cost as low as that of metabar
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c7d70523e3c22268585aa5085c2db1db
https://doi.org/10.21203/rs.3.rs-1306026/v1
https://doi.org/10.21203/rs.3.rs-1306026/v1
Publikováno v:
Methods in Ecology and Evolution
Methods in Ecology and Evolution, Wiley, 2021, 12 (6), pp.1050-1061. ⟨10.1111/2041-210X.13582⟩
Methods in Ecology and Evolution, Wiley, 2021, 12 (6), pp.1050-1061. ⟨10.1111/2041-210X.13582⟩
International audience; Different studies have shown that microbial communities living in animals (humans included), in or around plants have a significant impact on health and disease of their host and on various services, such as adaptation under s
Autor:
Sophie Schbath, Mahendra Mariadassou, Violette Da Cunha, Cédric Midoux, Patrick Forterre, Ariane Bize
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-22 (2021)
BMC Genomics
BMC Genomics, BioMed Central, 2021, 22, ⟨10.1186/s12864-021-07471-y⟩
BMC Genomics
BMC Genomics, BioMed Central, 2021, 22, ⟨10.1186/s12864-021-07471-y⟩
Background K-mer-based methods have greatly advanced in recent years, largely driven by the realization of their biological significance and by the advent of next-generation sequencing. Their speed and their independence from the annotation process a
Autor:
Mauro Petrillo, Fabrice Touzain, Mathieu Rolland, Stéphanie Bougeard, Sophie Schbath, Julie Hurel
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-17 (2020)
BMC Bioinformatics
BMC Bioinformatics, BioMed Central, 2020, 21 (1), ⟨10.1186/s12859-020-03611-5⟩
BMC Bioinformatics
BMC Bioinformatics, BioMed Central, 2020, 21 (1), ⟨10.1186/s12859-020-03611-5⟩
International audience; Background The European Community has adopted very restrictive policies regarding the dissemination and use of genetically modified organisms (GMOs). In fact, a maximum threshold of 0.9% of contaminating GMOs is tolerated for