Zobrazeno 1 - 10
of 114
pro vyhledávání: '"Song-Ho Chong"'
Publikováno v:
ACS Central Science, Vol 5, Iss 8, Pp 1342-1351 (2019)
Externí odkaz:
https://doaj.org/article/243d8c96e30840c1a0eaf027092c343c
Autor:
Song-Ho Chong, Sihyun Ham
Publikováno v:
Scientific Reports, Vol 8, Iss 1, Pp 1-9 (2018)
Abstract Dimensionality reduction with a suitable choice of order parameters or reaction coordinates is commonly used for analyzing high-dimensional time-series data generated by atomistic biomolecular simulations. So far, geometric order parameters,
Externí odkaz:
https://doaj.org/article/b8ac930d62a04b28b920b951af500cbb
Autor:
Song-Ho Chong, Sihyun Ham
Publikováno v:
Scientific Reports, Vol 7, Iss 1, Pp 1-10 (2017)
Abstract Interfacial waters are considered to play a crucial role in protein–protein interactions, but in what sense and why are they important? Here, using molecular dynamics simulations and statistical thermodynamic analyses, we demonstrate disti
Externí odkaz:
https://doaj.org/article/d2dbd5810ca14e038db625d3ffc14253
Publikováno v:
Proteins: Structure, Function, and Bioinformatics. 91:694-704
Understanding how protein-protein binding affinity is determined from molecular interactions at the interface is essential in developing protein therapeutics such as antibodies, but this has not yet been fully achieved. Among the major difficulties a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::355c5fddffe66173c4e471e00b3fc3a4
https://doi.org/10.1002/prot.26458
https://doi.org/10.1002/prot.26458
Autor:
Song‐Ho Chong, Sihyun Ham
Publikováno v:
Journal of computational chemistryREFERENCES.
The question of whether amino acids critical to protein folding kinetics are evolutionarily conserved has been investigated intensively in the past, but no consensus has yet been reached. Recently, we have demonstrated that the transition state, dict
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ee54e4e4c1ed8fa11f5963cee0c69dfd
https://pubmed.ncbi.nlm.nih.gov/36571461
https://pubmed.ncbi.nlm.nih.gov/36571461
Autor:
Song-Ho Chong, Sihyun Ham
Publikováno v:
Chemical Science. 12:5944-5951
Cooperativity is considered to be a key organizing principle behind biomolecular assembly, recognition and folding. However, it has remained very challenging to quantitatively characterize how cooperative processes occur on a concerted, multiple-inte
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7a5f2f82541d07d68e5b6041f52abef3
https://doi.org/10.1039/d0sc07025d
https://doi.org/10.1039/d0sc07025d
Publikováno v:
The Journal of Chemical Physics. 158:084502
A theoretical method for calculating the thermodynamic properties and phase equilibria of a binary liquid mixture using the reference interaction-site model (RISM) integral equation theory, which we had proposed recently, was extended to ternary liqu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::783985d8eccc6d7af246402344b4401a
https://doi.org/10.1063/5.0142256
https://doi.org/10.1063/5.0142256
Publikováno v:
The Journal of Chemical Physics. 157(23):234502
A theoretical method for calculating the thermodynamic properties and phase equilibria of liquid–liquid mixtures using the integral equation theory is proposed. The solvation chemical potentials of the two components are evaluated by the integral e
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e32874b0a3f948a2bd350ebfc789d4ff
https://nagoya.repo.nii.ac.jp/records/2006410
https://nagoya.repo.nii.ac.jp/records/2006410
Autor:
Sihyun Ham, Song-Ho Chong
Publikováno v:
Scientific Reports, Vol 9, Iss 1, Pp 1-9 (2019)
Scientific Reports
Scientific Reports
Folding funnel is the essential concept of the free energy landscape for ordered proteins. How does this concept apply to intrinsically disordered proteins (IDPs)? Here, we address this fundamental question through the explicit characterization of th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8f93c5b57b0ae0883cd259273805b631
http://link.springer.com/article/10.1038/s41598-019-50825-6
http://link.springer.com/article/10.1038/s41598-019-50825-6