Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Soner Koc"'
Autor:
Ramiz Demir, Soner Koc, Deniz Gulfem Ozturk, Sukriye Bilir, Halil İbrahim Ozata, Rhodri Williams, John Christy, Yunus Akkoc, İlker Tinay, Cigdem Gunduz-Demir, Devrim Gozuacik
Publikováno v:
Scientific Reports, Vol 14, Iss 1, Pp 1-10 (2024)
Abstract Bladder cancer is one of the most common cancer types in the urinary system. Yet, current bladder cancer diagnosis and follow-up techniques are time-consuming, expensive, and invasive. In the clinical practice, the gold standard for diagnosi
Externí odkaz:
https://doaj.org/article/de34f4525e06424089632e4ae6f5422d
Publikováno v:
F1000Research, Vol 9 (2020)
The BioCompute Object (BCO) standard is an IEEE standard (IEEE 2791-2020) designed to facilitate the communication of next-generation sequencing data analysis with applications across academia, government agencies, and industry. For example, the Food
Externí odkaz:
https://doaj.org/article/93af56d4ba4847f882f78005b8cd158c
Autor:
Li Chen, Jacqueline Mudd, Michael Ittmann, Carol J. Bult, Amanda R. Kirane, Jelena Randjelovic, Stephen Scott, Yige Wu, Li Ding, Vashisht G. Yennu-Nanda, Jing Wang, Christopher D. Lanier, Maihi Fujita, Emilio Cortes-Sanchez, Sienna Rocha, Susan G. Hilsenbeck, Kian-Huat Lim, Fernanda Martins Rodrigues, Jill Rubinstein, Nicholas Mitsiades, Haiyin Lin, Jayamanna Wickramasinghe, Andrew Butterfield, Bryan E. Welm, Alana L. Welm, Jose P. Zevallos, Jason Held, Nicole B. Coggins, Song Cao, Yuanxin Xi, Brenda C. Timmons, Paul Lott, David Menter, Shunqiang Li, Tina Primeau, Fei Yang, Andrea Wang-Gillam, Ramaswamy Govindan, Dali Li, Brandi Davis-Dusenbery, Sara Seepo, Michael C. Wendl, Jeffrey Grover, Brian S. White, Clifford G. Tepper, Peter N. Robinson, Michael A. Davies, Zhengtao Chu, Michael W. Lloyd, Hua Sun, Xiaoshan Zhang, Tamara Stankovic, Dylan Fingerman, Anuj Srivastava, Luis G. Carvajal-Carmona, Don L. Gibbons, Lijun Yao, Rebecca Aft, Hongyong Zhang, Ismail Meraz, John DiGiovanna, Scott Kopetz, Ling Zhao, Guadalupe Polanco-Echeverry, Feng Chen, Jeremy Hoog, Matthew A. Wyczalkowski, George Xu, John D. Minna, Yi Xu, Julie Belmar, Xiaowei Xu, Luc Girard, Dennis A. Dean, Tijana Borovski, Chong-xian Pan, Cynthia X. Ma, Alexa Morales Arana, Yize Li, Turcin Saridogan, Steven B. Neuhauser, Sandra Scherer, Vicki Chin, Rose Tipton, David R. Gandara, Sherri R. Davies, Argun Akcakanat, Rajesh Patidar, Julie K. Schwarz, Soner Koc, Gao Boning, Michael Kim, Bryce P. Kirby, Yvonne A. Evrard, Hyunsil Park, Christian Frech, Chia-Kuei Mo, Ran Zhang, Brian A. Van Tine, Jonathan W. Reiss, Min Xiao, Xing Yi Woo, Tiffany Le, Ana Estrada, Xiaofeng Zheng, Jeffrey A. Moscow, Mourad Majidi, Nadezhda V. Terekhanova, Katherine Fuh, Erkan Yuca, Timothy A. Yap, Jianhua Zhang, Matthew J. Ellis, Shannon Westin, James H. Doroshow, Vito W. Rebecca, Moon S. Chen, Coya Tapia, Reyka G Jayasinghe, Jack A. Roth, Jithesh Augustine, Ryan C. Fields, Michae T. Tetzlaff, Michael T. Lewis, Kurt W. Evans, Ralph W. deVere White, Brian J. Sanderson, May Cho, Jeffrey H. Chuang, Tiffany Wallace, Ryan Jeon, Ted Toal, Matthew H. Bailey, Bert W. O'Malley, Katherine L. Nathanson, Qin Liu, Benjamin J. Raphael, Jingqin Luo, Salma Kaochar, Huiqin Chen, Rajasekharan Somasundaram, Daniel Cui Zhou, John F. DiPersio, Andrew V. Kossenkov, Bingliang Fang, Vanessa Jensen, Simone Zaccaria, Alexey Sorokin, Ai-Hong Ma, Sidharth V. Puram, Min Jin Ha, Meenhard Herlyn, R. Jay Mashl, Kelly Gale, Bingbing Dai, Lacey E. Dobrolecki, Chieh-Hsiang Yang, Funda Meric-Bernstam
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-20 (2021)
Nature Communications
Nature Communications
Development of candidate cancer treatments is a resource-intensive process, with the research community continuing to investigate options beyond static genomic characterization. Toward this goal, we have established the genomic landscapes of 536 pati
Autor:
Brian S. White, Xing Yi Woo, Soner Koc, Todd Sheridan, Steven B. Neuhauser, Shidan Wang, Yvonne A. Evrard, John David Landua, R Jay Mashl, Sherri R. Davies, Bingliang Fang, Maria Gabriela Raso, Kurt W. Evans, Matthew H. Bailey, Yeqing Chen, Min Xiao, Jill Rubinstein, Ali Foroughi pour, Lacey Elizabeth Dobrolecki, Maihi Fujita, Junya Fujimoto, Guanghua Xiao, Ryan C. Fields, Jacqueline L. Mudd, Xiaowei Xu, Melinda G. Hollingshead, Shahanawaz Jiwani, PDXNet consortium, Tiffany A. Wallace, Jeffrey A. Moscow, James H. Doroshow, Nicholas Mitsiades, Salma Kaochar, Chong-xian Pan, Moon S. Chen, Luis G. Carvajal-Carmona, Alana L. Welm, Bryan E. Welm, Ramaswamy Govindan, Shunqiang Li, Michael A. Davies, Jack A. Roth, Funda Meric-Bernstam, Yang Xie, Meenhard Herlyn, Li Ding, Michael T. Lewis, Carol J. Bolt, Dennis A. Dean, Jeffrey H. Chuang
Publikováno v:
Cancer Research. 83:5407-5407
Patient-derived xenografts (PDXs) model human intra-tumoral heterogeneity in the context of the intact tissue of immunocompromised mice. Histological imaging via hematoxylin and eosin (H&E) staining is performed on PDX samples for routine assessment
Autor:
Soner, Koc, Michael W, Lloyd, Jeffrey W, Grover, Nan, Xiao, Sara, Seepo, Sai Lakshmi, Subramanian, Manisha, Ray, Christian, Frech, John, DiGiovanna, Phillip, Webster, Steven, Neuhauser, Anuj, Srivastava, Xing Yi, Woo, Brian J, Sanderson, Brian, White, Paul, Lott, Lacey E, Dobrolecki, Heidi, Dowst, Yvonne A, Evrard, Tiffany A, Wallace, Jeffrey A, Moscow, James H, Doroshow, Nicholas, Mitsiades, Salma, Kaochar, Chong-Xian, Pan, Moon S, Chen, Luis, Carvajal-Carmona, Alana L, Welm, Bryan E, Welm, Michael T, Lewis, Ramaswamy, Govindan, Li, Ding, Shunqiang, Li, Meenhard, Herlyn, Michael A, Davies, Jack, Roth, Funda, Meric-Bernstam, Peter N, Robinson, Carol J, Bult, Brandi, Davis-Dusenbery, Dennis A, Dean, Ai-Hong, Ma
Publikováno v:
NAR Cancer. 4
We created the PDX Network (PDXNet) portal (https://portal.pdxnetwork.org/) to centralize access to the National Cancer Institute-funded PDXNet consortium resources, to facilitate collaboration among researchers and to make these data easily availabl
Autor:
Li Ding, Michael Davies, Xing Yi Woo, Jeffrey H. Chuang, Carol J. Bult, Chong-Xian Pan, Brian S. White, Yvonne A. Evrard, Alana L. Welm, Christian Frech, Manisha Ray, Ramaswamy Govindan, Salma Kaochar, John DiGiovanna, Paul Lott, Anuj Srivastava, Luis G. Carvajal-Carmona, Bryan E. Welm, Steven B. Neuhauser, Tiffany A. Wallace, Sai Lakshmi Subramanian, Meenherd Herlyn, Brandi N. Davis-Dusenbery, Phillip Webster, Dennis A. Dean, James H. Doroshow, Nicholas Mitsiades, Soner Koc, Jeffrey W. Grover, Jack A. Roth, Michael T. Lewis, Sara Seepo, Funda Meric-Bernstam, Shunquang Li, Michael Lloyd, Moon S. Chen, Peter N. Robinson, Jeffrey A. Moscow, Brian J. Sanderson
We created the PDX Network (PDXNet) Portal (https://portal.pdxnetwork.org/) to centralize access to the National Cancer Institute-funded PDXNet consortium resources (i.e., PDX models, sequencing data, treatment response data, and bioinformatics workf
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4730f4b18283c72df15efe73236826f0
https://doi.org/10.1101/2021.10.15.464537
https://doi.org/10.1101/2021.10.15.464537
Autor:
Manisha Ray, Sai Lakshmi Subramanian, David Roberson, Zelia Worman, Dennis A. Dean, Soner Koc, Jack DiGiovanna, Brandi Davis-Dusenbery
Publikováno v:
Cancer Research. 82:6393-6393
The Cancer Genomics Cloud (CGC), powered by Seven Bridges, is an NCI-funded platform that streamlines access to large cancer datasets, bioinformatic tools, and cloud computation for cancer researchers. The attributes of the CGC designed to democratiz
Autor:
Soner Koc, Jovana Babic, Nevena Nikolic, Ana Stankovic, Daniel Ventre, Manisha Ray, Zelia F. Worman, Sai Lakshmi Subramanian, Dennis A. Dean, Jack DiGiovanna, Brandi Davis Dusenbery
Publikováno v:
Cancer Research. 82:6394-6394
Applying machine learning algorithms to analysis of multi-omics datasets has provided a wealth of analysis and interpretations of data not easily achievable by conventional methods. The Cancer Genomics Cloud (CGC), powered by Seven Bridges, offers ma
Autor:
Janisha A. Patel, Phillip T. Brooks, Rahi Navelkar, Soner Koc, Raja Mazumder, Robel Kahsay, Dave Roberson, Dennis A. Dean, Manisha Ray, Nan Xiao, Charles Hadley King, Anton Golikov, Jonathon Keeney, Chris Armstrong, Ekaterina Minina
Publikováno v:
Database: The Journal of Biological Databases and Curation
Developments in high-throughput sequencing (HTS) result in an exponential increase in the amount of data generated by sequencing experiments, an increase in the complexity of bioinformatics analysis reporting and an increase in the types of data gene
Autor:
Dennis A. Dean, Elaine Johanson, Janisha A. Patel, Eric F. Donaldson, Soner Koc, Nan Xiao, Purkayastha A, Elaine E. Thompson, Raja Mazumder, Charles Hadley King, Stephens Sh, Sean Watford, Jonathon Keeney
BackgroundThe field of bioinformatics has grown at such a rapid pace that a gap in standardization exists when reporting an analysis. In response, the BioCompute project was created to standardize the type and method of information communicated when
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c5d74eaf54527895d49f1a4b5eab4766
https://doi.org/10.1101/2020.11.02.365528
https://doi.org/10.1101/2020.11.02.365528