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Complete sequencing of ape genomes.

Autor: Yoo D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Rhie A; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Hebbar P; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Antonacci F; Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy., Logsdon GA; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Department of Genetics, Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19103, USA., Solar SJ; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Antipov D; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Pickett BD; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Safonova Y; Computer Science and Engineering Department, Huck Institutes of Life Sciences, Pennsylvania State University, State College, PA 16801, USA., Montinaro F; Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy.; Institute of Genomics, University of Tartu, Tartu, Estonia., Luo Y; Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA., Malukiewicz J; Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, 20146 Hamburg, Germany., Storer JM; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA., Lin J; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Sequeira AN; Department of Biology, Penn State University, University Park, PA 16802, USA., Mangan RJ; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Genetics Training Program, Harvard Medical School, Boston, MA 02115, USA., Hickey G; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Anez GM; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Balachandran P; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Bankevich A; Computer Science and Engineering Department, Huck Institutes of Life Sciences, Pennsylvania State University, State College, PA 16801, USA., Beck CR; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.; Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, CT, USA., Biddanda A; Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA., Borchers M; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Bouffard GG; NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Brannan E; Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA., Brooks SY; NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Carbone L; Department of Medicine, KCVI, Oregon Health Sciences University, Portland, OR, USA.; Division of Genetics, Oregon National Primate Research Center, Beaverton, OR, USA., Carrel L; PSU Medical School, Penn State University School of Medicine, Hershey, PA, USA., Chan AP; The Translational Genomics Research Institute, a part of the City of Hope National Medical Center, Phoenix, AZ, USA., Crawford J; NIH Intramural Sequencing Center, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Diekhans M; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Engelbrecht E; Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA., Feschotte C; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA., Formenti G; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY 10021, USA., Garcia GH; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., de Gennaro L; Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy., Gilbert D; San Diego Biomedical Research Institute, San Diego, CA, USA., Green RE; University of California Santa Cruz, Santa Cruz, CA, USA., Guarracino A; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA., Gupta I; Department of Computer Science and Engineering, University of California San Diego, CA, USA., Haddad D; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA., Han J; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, China., Harris RS; Department of Biology, Penn State University, University Park, PA 16802, USA., Hartley GA; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA., Harvey WT; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Hiller M; LOEWE Centre for Translational Biodiversity Genomics, Senckenberg Research Institute, Goethe University, Frankfurt, Germany., Hoekzema K; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Houck ML; San Diego Zoo Wildlife Alliance, Escondido, CA, 92027-7000, USA., Jeong H; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., Kamali K; Department of Biology, Penn State University, University Park, PA 16802, USA., Kellis M; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., Kille B; Department of Computer Science, Rice University, Houston, TX 77005, USA., Lee C; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Lee Y; Laboratory of bioinformatics and population genetics, Interdisciplinary program in bioinformatics, Seoul National University, Republic of Korea., Lees W; Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA.; Bioengineering Program, Faculty of Engineering, Bar-Ilan University, Ramat Gan, Israel., Lewis AP; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Li Q; Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA., Loftus M; Department of Genetics & Biochemistry, Clemson University, Clemson, SC, USA.; Center for Human Genetics, Clemson University, Greenwood, SC, USA., Loh YHE; Neuroscience Research Institute, University of California, Santa Barbara, CA, USA., Loucks H; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Ma J; Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, PA, USA., Mao Y; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, China.; Center for Genomic Research, International Institutes of Medicine, Fourth Affiliated Hospital, Zhejiang University, Yiwu, Zhejiang, China.; Shanghai Jiao Tong University Chongqing Research Institute, Chongqing, China., Martinez JFI; Computer Science and Engineering Department, Huck Institutes of Life Sciences, Pennsylvania State University, State College, PA 16801, USA., Masterson P; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA., McCoy RC; Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA., McGrath B; Department of Biology, Penn State University, University Park, PA 16802, USA., McKinney S; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Meyer BS; Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, 20146 Hamburg, Germany., Miga KH; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Mohanty SK; Department of Biology, Penn State University, University Park, PA 16802, USA., Munson KM; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Pal K; Department of Biology, Penn State University, University Park, PA 16802, USA., Pennell M; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Pevzner PA; Department of Computer Science and Engineering, University of California San Diego, CA, USA., Porubsky D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Potapova T; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Ringeling FR; Faculty of Informatics and Data Science, University of Regensburg, 93053 Regensburg, Germany., Roha JL; Department of Integrative Biology, University of California, Berkeley, Berkeley, USA., Ryder OA; San Diego Zoo Wildlife Alliance, Escondido, CA, 92027-7000, USA., Sacco S; University of California Santa Cruz, Santa Cruz, CA, USA., Saha S; Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA., Sasaki T; San Diego Biomedical Research Institute, San Diego, CA, USA., Schatz MC; Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA., Schork NJ; The Translational Genomics Research Institute, a part of the City of Hope National Medical Center, Phoenix, AZ, USA., Shanks C; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Smeds L; Department of Biology, Penn State University, University Park, PA 16802, USA., Son DR; Department of Ecology, Evolution and Marine Biology, Neuroscience Research Institute, University of California, Santa Barbara, CA, USA., Steiner C; San Diego Zoo Wildlife Alliance, Escondido, CA, 92027-7000, USA., Sweeten AP; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Tassia MG; Department of Biology, Johns Hopkins University, Baltimore, MD 21218, USA., Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA., Torres-González E; Department of Biology, Penn State University, University Park, PA 16802, USA., Trivedi M; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., Wei W; School of Life Sciences, Westlake University, Hangzhou 310024, China.; National Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070, Wuhan, China., Wertz J; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Yang M; Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, PA, USA., Zhang P; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA., Zhang S; Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, China., Zhang Y; Ray and Stephanie Lane Computational Biology Department, School of Computer Science, Carnegie Mellon University, PA, USA., Zhang Z; Department of Computer Science and Engineering, University of California San Diego, CA, USA., Zhao SA; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA., Zhu Y; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Jarvis ED; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA.; Howard Hughes Medical Institute, Chevy Chase, MD, USA., Gerton JL; Stowers Institute for Medical Research, Kansas City, MO 64110, USA., Rivas-González I; Department of Primate Behavior and Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany., Paten B; UC Santa Cruz Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95060, USA., Szpiech ZA; Department of Biology, Penn State University, University Park, PA 16802, USA., Huber CD; Department of Biology, Penn State University, University Park, PA 16802, USA., Lenz TL; Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, 20146 Hamburg, Germany., Konkel MK; Department of Genetics & Biochemistry, Clemson University, Clemson, SC, USA.; Center for Human Genetics, Clemson University, Greenwood, SC, USA., Yi SV; Department of Ecology, Evolution and Marine Biology, Department of Molecular, Cellular and Developmental Biology, Neuroscience Research Institute, University of California, Santa Barbara, CA, USA., Canzar S; Faculty of Informatics and Data Science, University of Regensburg, 93053 Regensburg, Germany., Watson CT; Department of Biochemistry and Molecular Genetics, School of Medicine, University of Louisville, Louisville, KY, USA., Sudmant PH; Department of Integrative Biology, University of California, Berkeley, Berkeley, USA.; Center for Computational Biology, University of California, Berkeley, Berkeley, USA., Molloy E; Department of Computer Science, University of Maryland, College Park, MD 20742, USA., Garrison E; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA., Lowe CB; Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA., Ventura M; Department of Biosciences, Biotechnology and Environment, University of Bari, Bari, 70124, Italy., O'Neill RJ; Institute for Systems Genomics, University of Connecticut, Storrs, CT 06269, USA.; Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, CT, USA.; Departments of Molecular and Cell Biology, UConn Storrs, CT, USA., Koren S; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Makova KD; Department of Biology, Penn State University, University Park, PA 16802, USA., Phillippy AM; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA., Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Oct 05. Date of Electronic Publication: 2024 Oct 05.

The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes.

Autor: Makova KD; Penn State University, University Park, PA, USA., Pickett BD; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Harris RS; Penn State University, University Park, PA, USA., Hartley GA; University of Connecticut, Storrs, CT, USA., Cechova M; University of California Santa Cruz, Santa Cruz, CA, USA., Pal K; Penn State University, University Park, PA, USA., Nurk S; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Yoo D; University of Washington School of Medicine, Seattle, WA, USA., Li Q; Johns Hopkins University, Baltimore, MD, USA., Hebbar P; University of California Santa Cruz, Santa Cruz, CA, USA., McGrath BC; Penn State University, University Park, PA, USA., Antonacci F; Università degli Studi di Bari Aldo Moro, Italy., Aubel M; University of Münster, Münster, Germany., Biddanda A; Johns Hopkins University, Baltimore, MD, USA., Borchers M; Stowers Institute, Kansas City, MO, USA., Bomberg E; University of Münster, Münster, Germany.; MPI for Developmental Biology, Tübingen, Germany., Bouffard GG; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Brooks SY; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Carbone L; Oregon Health & Science University, Portland, OR, USA.; Oregon National Primate Research Center, Hillsboro, OR, USA., Carrel L; Penn State University School of Medicine, Hershey, PA, USA., Carroll A; Google, Mountain View, CA, USA., Chang PC; Google, Mountain View, CA, USA., Chin CS; Foundation of Biological Data Sciences, Belmont, CA, USA., Cook DE; Google, Mountain View, CA, USA., Craig SJC; Penn State University, University Park, PA, USA., de Gennaro L; Università degli Studi di Bari Aldo Moro, Italy., Diekhans M; University of California Santa Cruz, Santa Cruz, CA, USA., Dutra A; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Garcia GH; University of Washington School of Medicine, Seattle, WA, USA., Grady PGS; University of Connecticut, Storrs, CT, USA., Green RE; University of California Santa Cruz, Santa Cruz, CA, USA., Haddad D; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., Hallast P; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Harvey WT; University of Washington School of Medicine, Seattle, WA, USA., Hickey G; University of California Santa Cruz, Santa Cruz, CA, USA., Hillis DA; University of California Santa Barbara, Santa Barbara, CA, USA., Hoyt SJ; University of Connecticut, Storrs, CT, USA., Jeong H; University of Washington School of Medicine, Seattle, WA, USA., Kamali K; Penn State University, University Park, PA, USA., Kosakovsky Pond SL; Temple University, Philadelphia, PA, USA., LaPolice TM; Penn State University, University Park, PA, USA., Lee C; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA., Lewis AP; University of Washington School of Medicine, Seattle, WA, USA., Loh YE; University of California Santa Barbara, Santa Barbara, CA, USA., Masterson P; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., McCoy RC; Johns Hopkins University, Baltimore, MD, USA., Medvedev P; Penn State University, University Park, PA, USA., Miga KH; University of California Santa Cruz, Santa Cruz, CA, USA., Munson KM; University of Washington School of Medicine, Seattle, WA, USA., Pak E; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Paten B; University of California Santa Cruz, Santa Cruz, CA, USA., Pinto BJ; Arizona State University, Tempe, AZ, USA., Potapova T; Stowers Institute, Kansas City, MO, USA., Rhie A; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rocha JL; University of California Berkeley, Berkeley, CA, USA., Ryabov F; Masters Program in National Research University Higher School of Economics, Moscow, Russia., Ryder OA; San Diego Zoological Society, San Diego, CA, USA., Sacco S; University of California Santa Cruz, Santa Cruz, CA, USA., Shafin K; Google, Mountain View, CA, USA., Shepelev VA; Institute of Molecular Genetics, Moscow, Russia., Slon V; Tel Aviv University, Israel., Solar SJ; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Storer JM; University of Connecticut, Storrs, CT, USA., Sudmant PH; University of California Berkeley, Berkeley, CA, USA., Sweetalana; Penn State University, University Park, PA, USA., Sweeten A; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.; Johns Hopkins University, Baltimore, MD, USA., Tassia MG; Johns Hopkins University, Baltimore, MD, USA., Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., Ventura M; Università degli Studi di Bari Aldo Moro, Italy., Wilson MA; Arizona State University, Tempe, AZ, USA., Young AC; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Zeng H; Penn State University, University Park, PA, USA., Zhang X; Penn State University, University Park, PA, USA., Szpiech ZA; Penn State University, University Park, PA, USA., Huber CD; Penn State University, University Park, PA, USA., Gerton JL; Stowers Institute, Kansas City, MO, USA., Yi SV; University of California Santa Barbara, Santa Barbara, CA, USA., Schatz MC; Johns Hopkins University, Baltimore, MD, USA., Alexandrov IA; Tel Aviv University, Israel., Koren S; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., O'Neill RJ; University of Connecticut, Storrs, CT, USA., Eichler E; University of Washington School of Medicine, Seattle, WA, USA.; Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., Phillippy AM; National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 Dec 01. Date of Electronic Publication: 2023 Dec 01.