How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities.

Autor: Bunne C; Department of Computer Science, Stanford University, Stanford, CA, USA.; Genentech, South San Francisco, CA, USA.; Chan Zuckerberg Initiative, Redwood City, CA, USA.; School of Computer and Communication Sciences and School of Life Sciences, EPFL, Lausanne, Switzerland., Roohani Y; Department of Computer Science, Stanford University, Stanford, CA, USA.; Chan Zuckerberg Initiative, Redwood City, CA, USA.; Arc Institute, Palo Alto, CA, USA., Rosen Y; Department of Computer Science, Stanford University, Stanford, CA, USA.; Chan Zuckerberg Initiative, Redwood City, CA, USA., Gupta A; Chan Zuckerberg Initiative, Redwood City, CA, USA.; KTH Royal Institute of Technology, Science for Life Laboratory, Department of Protein Science, Stockholm, Sweden., Zhang X; Department of Computer Science, Stanford University, Stanford, CA, USA.; Chan Zuckerberg Initiative, Redwood City, CA, USA.; Department of Bioengineering, Stanford University, Stanford, CA, USA., Roed M; Department of Computer Science, Stanford University, Stanford, CA, USA.; Chan Zuckerberg Initiative, Redwood City, CA, USA., Alexandrov T; Department of Pharmacology, University of California, San Diego, CA, USA.; Department of Bioengineering, University of California, San Diego, CA, USA., AlQuraishi M; Department of Systems Biology, Columbia University, New York, NY, USA., Brennan P; Chan Zuckerberg Initiative, Redwood City, CA, USA., Burkhardt DB; Cellarity, Somerville, MA, USA., Califano A; Department of Systems Biology, Columbia University, New York, NY, USA.; Vagelos College of Physicians and Surgeons, Columbia University Irving Medical Center, New York, NY, USA.; Chan Zuckerberg Biohub New York, NY, USA., Cool J; Chan Zuckerberg Initiative, Redwood City, CA, USA., Dernburg AF; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA., Ewing K; Chan Zuckerberg Initiative, Redwood City, CA, USA., Fox EB; Department of Computer Science, Stanford University, Stanford, CA, USA.; Department of Statistics, Stanford University, Stanford, CA, USA.; Chan Zuckerberg Biohub San Francisco, CA, USA., Haury M; Chan Zuckerberg Institute for Advanced Biological Imaging, Redwood City, CA, USA., Herr AE; Chan Zuckerberg Biohub San Francisco, CA, USA.; Department of Bioengineering, University of California, Berkeley, CA, USA., Horvitz E; Microsoft Research, Redmond, WA, USA., Hsu PD; Arc Institute, Palo Alto, CA, USA.; Department of Bioengineering, University of California, Berkeley, CA, USA.; Center for Computational Biology, University of California, Berkeley, Berkeley, CA, USA., Jain V; Google Research, Mountain View, CA, USA., Johnson GR; NewLimit, San Francisco, CA, USA., Kalil T; Schmidt Futures, USA., Kelley DR; Calico Life Sciences LLC, San Francisco, CA, USA., Kelley SO; Chan Zuckerberg Biohub Chicago, IL, USA.; Northwestern University, Evanston, IL, USA., Kreshuk A; Cell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany., Mitchison T; Department of Systems Biology, Harvard Medical School, Boston, MA, USA., Otte S; Chan Zuckerberg Institute for Advanced Biological Imaging, Redwood City, CA, USA., Shendure J; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA.; Seattle Hub for Synthetic Biology, Seattle, WA, USA.; Howard Hughes Medical Institute, Seattle, WA, USA., Sofroniew NJ; EvolutionaryScale, PBC, USA., Theis F; Institute of Computational Biology, Helmholtz Center Munich, Munich, Germany.; School of Computing, Information and Technology, Technical University of Munich, Munich, Germany.; TUM School of Life Sciences Weihenstephan, Technical University of Munich, Munich, Germany., Theodoris CV; Gladstone Institute of Cardiovascular Disease, Gladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA.; Department of Pediatrics, University of California, San Francisco, CA, USA., Upadhyayula S; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.; Chan Zuckerberg Biohub San Francisco, CA, USA.; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Valer M; Chan Zuckerberg Initiative, Redwood City, CA, USA., Wang B; Department of Computer Science, University of Toronto, Toronto, Ontario, Canada.; Vector Institute, Toronto, Ontario, Canada., Xing E; Carnegie Mellon University, School of Computer Science, Pittsburgh, PA, USA.; Mohamed Bin Zayed University of Artificial Intelligence, Abu Dhabi, United Arab Emirates., Yeung-Levy S; Department of Computer Science, Stanford University, Stanford, CA, USA.; Department of Biomedical Data Science, Stanford University, Stanford, CA, USA., Zitnik M; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.; Kempner Institute for the Study of Natural and Artificial Intelligence, Harvard University, Cambridge, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Karaletsos T; Chan Zuckerberg Initiative, Redwood City, CA, USA., Regev A; Genentech, South San Francisco, CA, USA., Lundberg E; Chan Zuckerberg Initiative, Redwood City, CA, USA.; KTH Royal Institute of Technology, Science for Life Laboratory, Department of Protein Science, Stockholm, Sweden.; Department of Bioengineering, Stanford University, Stanford, CA, USA.; Department of Pathology, Stanford University, Stanford, CA, USA., Leskovec J; Department of Computer Science, Stanford University, Stanford, CA, USA.; Chan Zuckerberg Initiative, Redwood City, CA, USA., Quake SR; Chan Zuckerberg Initiative, Redwood City, CA, USA.; Department of Bioengineering, Stanford University, Stanford, CA, USA.; Department of Applied Physics, Stanford University, Stanford, CA, USA.

Publikováno v: ArXiv [ArXiv] 2024 Oct 14. Date of Electronic Publication: 2024 Oct 14.

Q&A: The brain under a mesoscope: the forest and the trees.

Autor: Sofroniew NJ; Janelia Research Campus, Ashburn, VA, 20147, USA. sofroniewn@janelia.hhmi.org.

Publikováno v: BMC biology [BMC Biol] 2017 Sep 14; Vol. 15 (1), pp. 82. Date of Electronic Publication: 2017 Sep 14.

Neural coding in barrel cortex during whisker-guided locomotion.

Autor: Sofroniew NJ; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States., Vlasov YA; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States.; IBM Thomas J. Watson Research Center, New York, United States., Hires SA; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States., Freeman J; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States., Svoboda K; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, United States.

Publikováno v: ELife [Elife] 2015 Dec 23; Vol. 4. Date of Electronic Publication: 2015 Dec 23.

Mapping brain activity at scale with cluster computing.

Autor: Freeman J; Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, USA., Vladimirov N; Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, USA., Kawashima T; Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, USA., Mu Y; Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, USA., Sofroniew NJ; Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, USA., Bennett DV; Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, USA., Rosen J; University of California Berkeley, Computer Science Division, Berkeley, California, USA., Yang CT; Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, USA., Looger LL; Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, USA., Ahrens MB; Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, USA.

Publikováno v: Nature methods [Nat Methods] 2014 Sep; Vol. 11 (9), pp. 941-50. Date of Electronic Publication: 2014 Jul 27.