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Autor:
Ouverney Cleber C, Smits Samuel A
Publikováno v:
BMC Bioinformatics, Vol 11, Iss Suppl 6, p S18 (2010)
Abstract Background Comparative sequence analysis of the 16S rRNA gene is frequently used to characterize the microbial diversity of environmental samples. However, sequence similarities do not always imply functional or evolutionary relatedness due
Externí odkaz:
https://doaj.org/article/a7e28a242ad144618ed2d28fafce3c80
Autor:
Pruss KM; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Marcobal A; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Southwick AM; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Dahan D; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Smits SA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Ferreyra JA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Higginbottom SK; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Sonnenburg ED; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Kashyap PC; Department of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA., Choudhury B; GlycoAnalytics Core, University of California, San Diego, CA, USA., Bode L; Division of Neonatology and Division of Gastroenterology and Nutrition, Department of Pediatrics, University of California, San Diego, CA, USA., Sonnenburg JL; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA. jsonnenburg@stanford.edu.; Chan Zuckerberg Biohub, San Francisco, CA, 94158, USA. jsonnenburg@stanford.edu.
Publikováno v:
The ISME journal [ISME J] 2021 Feb; Vol. 15 (2), pp. 577-591. Date of Electronic Publication: 2020 Oct 21.
Autor:
Wijting IE; Department of Internal Medicine and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands., Rokx C; Department of Internal Medicine and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands., Zillikens MC; Department of Internal Medicine and Endocrinology, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands., Smits SA; Department of Internal Medicine and Endocrinology, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands., de Vries-Sluijs TE; Department of Internal Medicine and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands., Schurink CA; Department of Internal Medicine and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands., Bax HI; Department of Internal Medicine and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands., van der Ende ME; Department of Internal Medicine and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands., van Gorp EC; Department of Internal Medicine and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands., Nouwen JL; Department of Internal Medicine and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands., Verbon A; Department of Internal Medicine and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands., Bierman WF; Department of Internal Medicine/Infectious Diseases, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands., Rijnders BJ; Department of Internal Medicine and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, the Netherlands.
Publikováno v:
International journal of STD & AIDS [Int J STD AIDS] 2019 Oct; Vol. 30 (11), pp. 1042-1048. Date of Electronic Publication: 2019 Aug 20.
Autor:
Fragiadakis GK; a Department of Microbiology and Immunology , Stanford University School of Medicine , Stanford , CA , USA., Smits SA; a Department of Microbiology and Immunology , Stanford University School of Medicine , Stanford , CA , USA., Sonnenburg ED; a Department of Microbiology and Immunology , Stanford University School of Medicine , Stanford , CA , USA., Van Treuren W; a Department of Microbiology and Immunology , Stanford University School of Medicine , Stanford , CA , USA., Reid G; b Department of Microbiology & Immunology , Department of Surgery, Western University, Lawson Health Research Institute , London , Ontario , Canada., Knight R; c Departments of Pediatrics and Computer Science & Engineering and Center for Microbiome Innovation , University of California , San Diego , CA , USA., Manjurano A; d Parasitic Diseases Programme and Laboratory Sciences Programme, National Institute for Medical Research, Mwanza Centre , Mwanza , Tanzania., Changalucha J; e Sexual and Reproductive Health Programme and Laboratory Sciences Programme, National Institute for Medical Research, Mwanza Centre , Mwanza , Tanzania., Dominguez-Bello MG; f Department of Biochemistry and Microbiology, Department of Anthropology Rutgers, The State University of New Jersey, New Brunswick , NJ USA., Leach J; g Human Food Project , Terlingua , Texas , USA.; h The Department of Twin Research and Genetic Epidemiology King's College London, St Thomas' Hospital , London , UK., Sonnenburg JL; a Department of Microbiology and Immunology , Stanford University School of Medicine , Stanford , CA , USA.; i Chan Zuckerberg Biohub , San Francisco, CA , USA.
Publikováno v:
Gut microbes [Gut Microbes] 2019; Vol. 10 (2), pp. 216-227. Date of Electronic Publication: 2018 Aug 17.
Autor:
Battaglioli EJ; Department of Medicine, Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA., Hale VL; Department of Surgery, Mayo Clinic, Rochester, MN, USA.; Department of Veterinary Preventive Medicine, Ohio State University, Columbus, OH, USA., Chen J; Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA., Jeraldo P; Department of Surgery, Mayo Clinic, Rochester, MN, USA., Ruiz-Mojica C; Department of Medicine, Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA., Schmidt BA; Department of Medicine, Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA., Rekdal VM; Department of Medicine, Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA., Till LM; Department of Medicine, Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA., Huq L; Department of Surgery, Mayo Clinic, Rochester, MN, USA., Smits SA; Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA., Moor WJ; Department of Medicine, Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA., Jones-Hall Y; Department of Comparative Pathobiology, Purdue University, West Lafayette, IN, USA., Smyrk T; Department of Laboratory Medicine and Pathology, Division of Anatomic Pathology, Mayo Clinic, Rochester, MN, USA., Khanna S; Department of Medicine, Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA., Pardi DS; Department of Medicine, Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA., Grover M; Department of Medicine, Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA., Patel R; Department of Laboratory Medicine and Pathology, Division of Clinical Microbiology, Mayo Clinic, Rochester, MN, USA., Chia N; Department of Surgery, Mayo Clinic, Rochester, MN, USA., Nelson H; Department of Surgery, Mayo Clinic, Rochester, MN, USA., Sonnenburg JL; Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA., Farrugia G; Division of Gastroenterology, Mayo Clinic, Jacksonville, FL, USA., Kashyap PC; Department of Medicine, Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA. kashyap.purna@mayo.edu.; Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, MN, USA.
Publikováno v:
Science translational medicine [Sci Transl Med] 2018 Oct 24; Vol. 10 (464).
Autor:
Hryckowian AJ; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Van Treuren W; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Smits SA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Davis NM; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Gardner JO; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA., Bouley DM; Department of Comparative Medicine, Stanford University School of Medicine, Stanford, CA, USA., Sonnenburg JL; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA. jsonnenburg@stanford.edu.
Publikováno v:
Nature microbiology [Nat Microbiol] 2018 Jun; Vol. 3 (6), pp. 662-669. Date of Electronic Publication: 2018 Apr 23.
Autor:
Smits SA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA., Leach J; Human Food Project, 53600 Highway 118, Terlingua, TX 79852, USA.; The Department of Twin Research and Genetic Epidemiology, King's College London, St. Thomas' Hospital, Lambeth Palace Road, London SE1 7EH, UK., Sonnenburg ED; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA., Gonzalez CG; Department of Chemical and Systems Biology, Stanford School of Medicine, Stanford University, Stanford, CA 94025, USA., Lichtman JS; Department of Chemical and Systems Biology, Stanford School of Medicine, Stanford University, Stanford, CA 94025, USA., Reid G; Lawson Health Research Institute and Western University, London, Ontario N6A 4V2, Canada., Knight R; Departments of Pediatrics and Computer Science and Engineering and Center for Microbiome Innovation, University of California, San Diego, CA 92093, USA., Manjurano A; National Institute for Medical Research, Mwanza 11101, Tanzania., Changalucha J; National Institute for Medical Research, Mwanza 11101, Tanzania., Elias JE; Department of Chemical and Systems Biology, Stanford School of Medicine, Stanford University, Stanford, CA 94025, USA., Dominguez-Bello MG; School of Medicine and Department of Anthropology, New York University, New York, NY, USA., Sonnenburg JL; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Publikováno v:
Science (New York, N.Y.) [Science] 2017 Aug 25; Vol. 357 (6353), pp. 802-806.
Autor:
Smits SA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA., Marcobal A; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA., Higginbottom S; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA., Sonnenburg JL; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA., Kashyap PC; Department of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota, USA.
Publikováno v:
MSystems [mSystems] 2016 Sep 06; Vol. 1 (5). Date of Electronic Publication: 2016 Sep 06 (Print Publication: 2016).