The mitochondrial multi-omic response to exercise training across rat tissues

Autor: Adkins, Joshua N., Armenteros, Jose Juan Almagro, Amper, Mary Anne S., Bae, Dam, Bamman, Marcas, Bararpour, Nasim, Barnes, Jerry, Bergman, Bryan C., Bessesen, Daniel H., Broskey, Nicholas T., Buford, Thomas W., Carr, Steven, Chambers, Toby L., Chavez, Clarisa, Chiu, Roxanne, Clark, Natalie, Cutter, Gary, Evans, Charles R., Franczak, Edziu, Gagne, Nicole, Ge, Yongchao, Hennig, Krista M., Houmard, Joseph A., Huffman, Kim M., Hung, Chia-Jui, Hutchinson-Bunch, Chelsea, Ilkayeva, Olga, Jackson, Bailey E., Jankowski, Catherine M., Jin, Christopher A., Johannsen, Neil M., Katz, Daniel H., Keshishian, Hasmik, Kohrt, Wendy M., Kramer, Kyle S., Kraus, William E., Lester, Bridget, Li, Jun Z., Lira, Ana K., Lowe, Adam, Mani, D.R., Many, Gina M., May, Sandy, Melanson, Edward L., Moore, Samuel G., Moreau, Kerrie L., Musi, Nicolas, Nachun, Daniel, Nair, Venugopalan D., Newgard, Christopher, Nudelman, German, Piehowski, Paul D., Pincas, Hanna, Qian, Wei-Jun, Rankinen, Tuomo, Rasmussen, Blake B., Ravussin, Eric, Rooney, Jessica L., Rushing, Scott, Samdarshi, Mihir, Sanford, James A., Schauer, Irene E., Sealfon, Stuart C., Smith, Kevin S., Smith, Gregory R., Snyder, Michael, Stowe, Cynthia L., Talton, Jennifer W., Teng, Christopher, Thalacker-Mercer, Anna, Tracy, Russell, Trappe, Scott, Trappe, Todd A., Vasoya, Mital, Vetr, Nikolai G., Volpi, Elena, Walkup, Michael P., Wiel, Laurens, Wu, Si, Yan, Zhen, Yu, Jiye, Zaslavsky, Elena, Zebarjadi, Navid, Zhen, Jimmy, Amar, David, Gay, Nicole R., Jimenez-Morales, David, Jean Beltran, Pierre M., Ramaker, Megan E., Raja, Archana Natarajan, Zhao, Bingqing, Sun, Yifei, Marwaha, Shruti, Gaul, David A., Hershman, Steven G., Ferrasse, Alexis, Xia, Ashley, Lanza, Ian, Fernández, Facundo M., Montgomery, Stephen B., Hevener, Andrea L., Ashley, Euan A., Walsh, Martin J., Sparks, Lauren M., Burant, Charles F., Rector, R. Scott, Thyfault, John, Wheeler, Matthew T., Goodpaster, Bret H., Coen, Paul M., Schenk, Simon, Bodine, Sue C., Lindholm, Malene E.

Publikováno v: In Cell Metabolism 4 June 2024 36(6):1411-1429

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Derivative-free optimization of rate parameters of capsid assembly models from bulk in vitro data

Autor: Xie, Lu, Smith, Gregory R., Schwartz, Russell

The assembly of virus capsids from free coat proteins proceeds by a complicated cascade of association and dissociation steps, the great majority of which cannot be directly experimentally observed. This has made capsid assembly a rich field for comp

Externí odkaz: http://arxiv.org/abs/1507.02148

Network inference from perturbation time course data.

Autor: Sarmah, Deepraj¹ (AUTHOR), Smith, Gregory R.² (AUTHOR), Bouhaddou, Mehdi^3,4 (AUTHOR), Stern, Alan D.⁵ (AUTHOR), Erskine, James¹ (AUTHOR), Birtwistle, Marc R.^1,6 (AUTHOR) mbirtwi@clemson.edu

Publikováno v: NPJ Systems Biology & Applications. 11/1/2022, Vol. 8 Issue 1, p1-18. 18p.

Multiomic identification of key transcriptional regulatory programs during endurance exercise training

Autor: Smith, Gregory R., Zhao, Bingqing, Lindholm, Malene E., Raja, Archana, Viggars, Mark, Pincas, Hanna, Gay, Nicole R., Sun, Yifei, Ge, Yongchao, Nair, Venugopalan D., Sanford, James A., S. Amper, Mary Anne, Vasoya, Mital, Smith, Kevin S., Montgomery, Stephen, Zaslavsky, Elena, Bodine, Sue C., Esser, Karyn A., Walsh, Martin J., Snyder, Michael P., Sealfon, Stuart C.

Publikováno v: bioRxiv

Transcription factors (TFs) play a key role in regulating gene expression and responses to stimuli. We conducted an integrated analysis of chromatin accessibility and RNA expression across various rat tissues following endurance exercise training (EE

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aafc33b3662dc5e9fbdeea13cbebf164
https://europepmc.org/articles/PMC9882056/