RWD-Cockpit: Application for Quality Assessment of Real-world Data.

Autor: Babrak LM; University of Applied Sciences and Arts Northwestern Switzerland, School of Life Sciences, Muttenz, Switzerland., Smakaj E; University of Applied Sciences and Arts Northwestern Switzerland, School of Life Sciences, Muttenz, Switzerland., Agac T; University of Applied Sciences and Arts Northwestern Switzerland, School of Life Sciences, Muttenz, Switzerland., Asprion PM; Fachhochschule Nordwestschweiz University of Applied Sciences and Arts Northwestern Switzerland, School of Business, Olten, Switzerland., Grimberg F; Fachhochschule Nordwestschweiz University of Applied Sciences and Arts Northwestern Switzerland, School of Business, Olten, Switzerland., der Werf DV; Q-Strip, Steenbergen, Netherlands., van Ginkel EW; Q-Strip, Steenbergen, Netherlands., Tosoni DD; University of Applied Sciences and Arts Northwestern Switzerland, School of Life Sciences, Muttenz, Switzerland., Clay I; Evidation Health Inc, San Mateo, CA, United States., Degen M; University of Applied Sciences and Arts Northwestern Switzerland, School of Life Sciences, Muttenz, Switzerland., Brodbeck D; University of Applied Sciences and Arts Northwestern Switzerland, School of Life Sciences, Muttenz, Switzerland., Natali EN; University of Applied Sciences and Arts Northwestern Switzerland, School of Life Sciences, Muttenz, Switzerland., Schkommodau E; University of Applied Sciences and Arts Northwestern Switzerland, School of Life Sciences, Muttenz, Switzerland., Miho E; University of Applied Sciences and Arts Northwestern Switzerland, School of Life Sciences, Muttenz, Switzerland.; aiNET GmbH, Basel, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland.

Publikováno v: JMIR formative research [JMIR Form Res] 2022 Oct 18; Vol. 6 (10), pp. e29920. Date of Electronic Publication: 2022 Oct 18.

Machine learning for precision diagnostics of autoimmunity.

Autor: Kruta, Jan¹ (AUTHOR), Carapito, Raphael^2,3 (AUTHOR), Trendelenburg, Marten⁴ (AUTHOR), Martin, Thierry² (AUTHOR), Rizzi, Marta⁵ (AUTHOR), Voll, Reinhard E.⁵ (AUTHOR), Cavalli, Andrea⁶ (AUTHOR), Natali, Eriberto¹ (AUTHOR), Meier, Patrick¹ (AUTHOR), Stawiski, Marc¹ (AUTHOR), Mosbacher, Johannes¹ (AUTHOR), Mollet, Annette⁷ (AUTHOR), Santoro, Aurelia⁸ (AUTHOR), Capri, Miriam⁸ (AUTHOR), Giampieri, Enrico⁸ (AUTHOR), Schkommodau, Erik¹ (AUTHOR), Miho, Enkelejda^1,9,10 (AUTHOR) enkelejda.miho@fhnw.ch

Publikováno v: Scientific Reports. 11/16/2024, Vol. 14 Issue 1, p1-15. 15p.

Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences.

Autor: Smakaj E; Institute of Biomedical Engineering and Medical Informatics, School of Life Sciences, FHNW University of Applied Sciences and Arts Northwestern Switzerland, Muttenz 4132, Switzerland., Babrak L; Institute of Biomedical Engineering and Medical Informatics, School of Life Sciences, FHNW University of Applied Sciences and Arts Northwestern Switzerland, Muttenz 4132, Switzerland., Ohlin M; Department of Immunotechnology, Lund University, Lund 223, Sweden., Shugay M; Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow 121205, Russia., Briney B; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Tosoni D; Institute of Biomedical Engineering and Medical Informatics, School of Life Sciences, FHNW University of Applied Sciences and Arts Northwestern Switzerland, Muttenz 4132, Switzerland., Galli C; Institute of Biomedical Engineering and Medical Informatics, School of Life Sciences, FHNW University of Applied Sciences and Arts Northwestern Switzerland, Muttenz 4132, Switzerland., Grobelsek V; Department of Biosystems Science and Engineering, ETH Zurich, Basel 4058, Switzerland., D'Angelo I; One Amgen Center Drive, Amgen, Inc., Therapeutic Discovery/Molecular Engineering, Thousand Oaks, CA 91320, USA., Olson B; Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.; Department of Statistics, University of Washington, Seattle, WA 98195, USA., Reddy S; Department of Biosystems Science and Engineering, ETH Zurich, Basel 4058, Switzerland., Greiff V; Department of Immunology, University of Oslo, Oslo 0372, Norway., Trück J; Paediatric Immunology, Children's Research Center, University Children's Hospital, University of Zurich, Zurich 8032, Switzerland., Marquez S; Department of Pathology, Yale School of Medicine, New Haven, CT 06511, USA., Lees W; Department of Biological Sciences and Institute of Structural and Molecular Biology, Birkbeck College, University of London, London WC1E 7HX, UK., Miho E; Institute of Biomedical Engineering and Medical Informatics, School of Life Sciences, FHNW University of Applied Sciences and Arts Northwestern Switzerland, Muttenz 4132, Switzerland.; aiNET GmbH, Switzerland Innovation Park Basel Area AG, Basel 4057, Switzerland.

Publikováno v: Bioinformatics (Oxford, England) [Bioinformatics] 2020 Mar 01; Vol. 36 (6), pp. 1731-1739.

The dengue-specific immune response and antibody identification with machine learning.

Autor: Natali, Eriberto Noel, Horst, Alexander, Meier, Patrick, Greiff, Victor, Nuvolone, Mario, Babrak, Lmar Marie, Fink, Katja, Miho, Enkelejda

Publikováno v: NPJ Vaccines; 12/9/2024, Vol. 9 Issue 1, p1-15, 15p

High throughput long-read sequencing of circulating lymphocytes of the evolutionarily distant sea lamprey reveals diversity and common elements of the variable lymphocyte receptor B (VLRB) repertoire.

Autor: Zia, Amin, Orozco, Ariel, Fang, Irene S. Y., Ehrhardt, Götz R. A.

Publikováno v: Frontiers in Immunology; 2024, p1-11, 11p