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Akademický článek

Exploring Ion Mobility Mass Spectrometry Data File Conversions to Leverage Existing Tools and Enable New Workflows.

Autor: Stow SM; Agilent Technologies, Santa Clara, California 95051, United States., Gibbons BC; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States., Rorrer Iii LC; MOBILion Systems, Chadds Ford, Pennsylvania 19317, United States., Royer L; MOBILion Systems, Chadds Ford, Pennsylvania 19317, United States., Glaskin RS; Agilent Technologies, Santa Clara, California 95051, United States., Slysz GW; Agilent Technologies, Santa Clara, California 95051, United States., Kurulugama RT; Agilent Technologies, Santa Clara, California 95051, United States., Fjeldsted JC; Agilent Technologies, Santa Clara, California 95051, United States., DeBord D; MOBILion Systems, Chadds Ford, Pennsylvania 19317, United States., Bilbao A; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States.

Publikováno v: Journal of the American Society for Mass Spectrometry [J Am Soc Mass Spectrom] 2024 Aug 07; Vol. 35 (8), pp. 1991-2001. Date of Electronic Publication: 2024 Jul 26.

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Akademický článek

Short-Term Stable Isotope Probing of Proteins Reveals Taxa Incorporating Inorganic Carbon in a Hot Spring Microbial Mat.

Autor: Steinke L; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, Nebraska, USA., Slysz GW; Environmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA., Lipton MS; Environmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA., Klatt C; Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, Montana, USA., Moran JJ; Environmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA., Romine MF; Environmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA., Wood JM; Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, Montana, USA., Anderson G; Environmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA., Bryant DA; Department of Biochemistry and Molecular Biology, The Pennsylvania State University, State College, Pennsylvania, USA.; Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, USA., Ward DM; Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, Montana, USA umbdw@montana.edu.

Publikováno v: Applied and environmental microbiology [Appl Environ Microbiol] 2020 Mar 18; Vol. 86 (7). Date of Electronic Publication: 2020 Mar 18 (Print Publication: 2020).

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Akademický článek

An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies.

Autor: Bilbao A; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Gibbons BC; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Slysz GW; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Crowell KL; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Monroe ME; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Ibrahim YM; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Smith RD; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Payne SH; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Baker ES; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA.

Publikováno v: International journal of mass spectrometry [Int J Mass Spectrom] 2018 Apr; Vol. 427, pp. 91-99. Date of Electronic Publication: 2017 Nov 06.

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Akademický článek

An Optimized Informatics Pipeline for Mass Spectrometry-Based Peptidomics.

Autor: Wu C; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA., Monroe ME; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA., Xu Z; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA., Slysz GW; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA., Payne SH; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA., Rodland KD; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA., Liu T; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA. tao.liu@pnnl.gov., Smith RD; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, 99352, USA. dick.smith@pnnl.gov.

Publikováno v: Journal of the American Society for Mass Spectrometry [J Am Soc Mass Spectrom] 2015 Dec; Vol. 26 (12), pp. 2002-8. Date of Electronic Publication: 2015 May 27.

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Akademický článek

Identification of Salmonella Typhimurium Deubiquitinase SseL Substrates by Immunoaffinity Enrichment and Quantitative Proteomic Analysis.

Autor: Nakayasu ES; Biological Science Division, Pacific Northwest National Laboratory , Richland, Washington 99352, United States., Sydor MA; Biological Science Division, Pacific Northwest National Laboratory , Richland, Washington 99352, United States., Brown RN; Biological Science Division, Pacific Northwest National Laboratory , Richland, Washington 99352, United States., Sontag RL; Biological Science Division, Pacific Northwest National Laboratory , Richland, Washington 99352, United States., Sobreira TJ; National Center for Research in Energy and Materials, National Laboratory for Biosciences (LNBio) , Campinas, Sao Paulo 13083-970, Brazil., Slysz GW; Biological Science Division, Pacific Northwest National Laboratory , Richland, Washington 99352, United States., Humphrys DR; Biological Science Division, Pacific Northwest National Laboratory , Richland, Washington 99352, United States., Skarina T; Department of Chemical Engineering and Applied Chemistry, Banting and Best Department of Medical Research, Midwest Centre for Structural Genomics, University of Toronto , Toronto, Ontario M5G 1L6, Canada., Onoprienko O; Department of Chemical Engineering and Applied Chemistry, Banting and Best Department of Medical Research, Midwest Centre for Structural Genomics, University of Toronto , Toronto, Ontario M5G 1L6, Canada., Di Leo R; Department of Chemical Engineering and Applied Chemistry, Banting and Best Department of Medical Research, Midwest Centre for Structural Genomics, University of Toronto , Toronto, Ontario M5G 1L6, Canada., Deatherage Kaiser BL; Biological Science Division, Pacific Northwest National Laboratory , Richland, Washington 99352, United States., Li J; Department of Molecular Microbiology & Immunology, Oregon Health & Science University , Portland, Oregon 97239, United States., Ansong C; Biological Science Division, Pacific Northwest National Laboratory , Richland, Washington 99352, United States., Cambronne ED; Department of Molecular Microbiology & Immunology, Oregon Health & Science University , Portland, Oregon 97239, United States., Smith RD; Biological Science Division, Pacific Northwest National Laboratory , Richland, Washington 99352, United States., Savchenko A; Department of Chemical Engineering and Applied Chemistry, Banting and Best Department of Medical Research, Midwest Centre for Structural Genomics, University of Toronto , Toronto, Ontario M5G 1L6, Canada., Adkins JN; Biological Science Division, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.

Publikováno v: Journal of proteome research [J Proteome Res] 2015 Sep 04; Vol. 14 (9), pp. 4029-38. Date of Electronic Publication: 2015 Aug 06.

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Akademický článek

Comprehensive quantitative analysis of ovarian and breast cancer tumor peptidomes.

Autor: Xu Z; Biological Sciences Division and ‡Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99354, United States., Wu C, Xie F, Slysz GW, Tolic N, Monroe ME, Petyuk VA, Payne SH, Fujimoto GM, Moore RJ, Fillmore TL, Schepmoes AA, Levine DA, Townsend RR, Davies SR, Li S, Ellis M, Boja E, Rivers R, Rodriguez H, Rodland KD, Liu T, Smith RD

Publikováno v: Journal of proteome research [J Proteome Res] 2015 Jan 02; Vol. 14 (1), pp. 422-33. Date of Electronic Publication: 2014 Nov 10.

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Akademický článek

GlyQ-IQ: glycomics quintavariate-informed quantification with high-performance computing and GlycoGrid 4D visualization.

Autor: Kronewitter SR; Biological Sciences Division, Pacific Northwest National Laboratory , P.O. Box 999, Richland, Washington 99352, United States., Slysz GW, Marginean I, Hagler CD, LaMarche BL, Zhao R, Harris MY, Monroe ME, Polyukh CA, Crowell KL, Fillmore TL, Carlson TS, Camp DG 2nd, Moore RJ, Payne SH, Anderson GA, Smith RD

Publikováno v: Analytical chemistry [Anal Chem] 2014 Jul 01; Vol. 86 (13), pp. 6268-76. Date of Electronic Publication: 2014 Jun 13.

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