Transition to Piscivory Seen Through Brain Transcriptomics in a Juvenile Percid Fish: Complex Interplay of Differential Gene Transcription, Alternative Splicing, and ncRNA Activity.

Autor: Symonová R; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic.; Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic., Jůza T; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Tesfaye M; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic.; South Bohemian Research Centre for Aquaculture and Biodiversity of Hydrocenoses, Faculty of Fisheries and Protection of Waters, University of South Bohemia in České Budějovice, Vodňany, Czech Republic., Brabec M; Institute of Computer Science, Czech Academy of Sciences, Prague, Czech Republic., Bartoň D; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Blabolil P; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic.; Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic., Draštík V; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Kočvara L; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Muška M; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Prchalová M; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Říha M; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Šmejkal M; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Souza AT; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic.; Institute for Atmospheric and Earth System Research INAR, Forest Sciences, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland., Sajdlová Z; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Tušer M; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Vašek M; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Skubic C; Institute for Biochemistry and Molecular Genetics, Centre for Functional Genomics and Bio-Chips, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia., Brabec J; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic., Kubečka J; Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic.

Publikováno v: Journal of experimental zoology. Part A, Ecological and integrative physiology [J Exp Zool A Ecol Integr Physiol] 2024 Dec 04. Date of Electronic Publication: 2024 Dec 04.

Knockouts of CYP51A1 , DHCR24 , or SC5D from cholesterol synthesis reveal pathways modulated by sterol intermediates.

Autor: Skubic C; Center for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, 1000 Ljubljana, Slovenia., Trček H; Center for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, 1000 Ljubljana, Slovenia., Nassib P; Center for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, 1000 Ljubljana, Slovenia., Kreft T; Center for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, 1000 Ljubljana, Slovenia., Walakira A; Center for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, 1000 Ljubljana, Slovenia., Pohar K; Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia., Petek S; Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia., Režen T; Center for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, 1000 Ljubljana, Slovenia., Ihan A; Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia., Rozman D; Center for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, 1000 Ljubljana, Slovenia.

Publikováno v: IScience [iScience] 2024 Aug 03; Vol. 27 (9), pp. 110651. Date of Electronic Publication: 2024 Aug 03 (Print Publication: 2024).

Mechanisms of pathogenicity and the quest for genetic modifiers of kidney disease in branchiootorenal syndrome.

Autor: Sewerin S; Division of Nephrology, University of Leipzig Medical Center, Leipzig, Germany.; Current affiliation: Broad Institute of MIT and Harvard, Cambridge, MA, USA., Aurnhammer C; Division of Nephrology, University of Leipzig Medical Center, Leipzig, Germany., Skubic C; Institute of Biochemistry, Centre for Functional Genomics and Bio-Chips, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia., Blagotinšek Cokan K; Institute of Biochemistry, Centre for Functional Genomics and Bio-Chips, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia., Jeruc J; Institute of Pathology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia., Rozman D; Institute of Biochemistry, Centre for Functional Genomics and Bio-Chips, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia., Pfister F; Institute of Pathology, University of Erlangen Medical Center, Erlangen, Germany.; Current affiliation: Humanpathologie Dr. med. Manfred Weiß MVZ GmbH, Erlangen-Tennenlohe, Germany., Dittrich K; Division of Pediatric Nephrology, University of Leipzig Medical Center, Leipzig, Germany., Mayer B; Division of Pediatric Nephrology, University of Dresden Medical Center, Dresden, Germany., Schönauer R; Division of Nephrology, University of Leipzig Medical Center, Leipzig, Germany.; Current affiliation: Department of Nephrology and Medical Intensive Care, Charité Universitätsmedizin Berlin, Berlin, Germany., Petzold F; Division of Nephrology, University of Leipzig Medical Center, Leipzig, Germany., Halbritter J; Division of Nephrology, University of Leipzig Medical Center, Leipzig, Germany.; Current affiliation: Department of Nephrology and Medical Intensive Care, Charité Universitätsmedizin Berlin, Berlin, Germany.

Publikováno v: Clinical kidney journal [Clin Kidney J] 2023 Oct 13; Vol. 17 (1), pp. sfad260. Date of Electronic Publication: 2023 Oct 13 (Print Publication: 2024).

Integrative computational modeling to unravel novel potential biomarkers in hepatocellular carcinoma.

Autor: Walakira A; Centre for Functional Genomics and Bio-Chips, Institute for Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia. Electronic address: andrew.walakira@mf.uni-lj.si., Skubic C; Centre for Functional Genomics and Bio-Chips, Institute for Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia., Nadižar N; Centre for Functional Genomics and Bio-Chips, Institute for Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia., Rozman D; Centre for Functional Genomics and Bio-Chips, Institute for Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia., Režen T; Centre for Functional Genomics and Bio-Chips, Institute for Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia., Mraz M; Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia., Moškon M; Faculty of Computer and Information Science, University of Ljubljana, Ljubljana, Slovenia. Electronic address: miha.moskon@fri.uni-lj.si.

Publikováno v: Computers in biology and medicine [Comput Biol Med] 2023 Jun; Vol. 159, pp. 106957. Date of Electronic Publication: 2023 Apr 20.

Bacterial DNA Recognition by SERS Active Plasma-Coupled Nanogold.

Autor: Shvalya V; Department of Gaseous Electronics (F6), Jožef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana, Slovenia., Vasudevan A; Department of Gaseous Electronics (F6), Jožef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana, Slovenia.; Jozef Stefan International Postgraduate School, Jamova cesta 39, SI-1000 Ljubljana, Slovenia., Modic M; Department of Gaseous Electronics (F6), Jožef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana, Slovenia., Abutoama M; Department of Electrooptics and Photonics Engineering and the Ilse Katz Center for Nanoscale Science and Technology, School of Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beer Sheba 84105, Israel., Skubic C; Centre for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška 4, SI-1000 Ljubljana, Slovenia., Nadižar N; Centre for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška 4, SI-1000 Ljubljana, Slovenia., Zavašnik J; Department of Gaseous Electronics (F6), Jožef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana, Slovenia., Vengust D; Department of Gaseous Electronics (F6), Jožef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana, Slovenia., Zidanšek A; Department of Gaseous Electronics (F6), Jožef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana, Slovenia.; Jozef Stefan International Postgraduate School, Jamova cesta 39, SI-1000 Ljubljana, Slovenia., Abdulhalim I; Department of Electrooptics and Photonics Engineering and the Ilse Katz Center for Nanoscale Science and Technology, School of Electrical and Computer Engineering, Ben-Gurion University of the Negev, Beer Sheba 84105, Israel., Rozman D; Centre for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška 4, SI-1000 Ljubljana, Slovenia., Cvelbar U; Department of Gaseous Electronics (F6), Jožef Stefan Institute, Jamova cesta 39, SI-1000 Ljubljana, Slovenia.; Jozef Stefan International Postgraduate School, Jamova cesta 39, SI-1000 Ljubljana, Slovenia.

Publikováno v: Nano letters [Nano Lett] 2022 Dec 14; Vol. 22 (23), pp. 9757-9765. Date of Electronic Publication: 2022 Oct 27.